BMRB Entry 15551
Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR15551
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Title: Backbone 1H and 15N Chemical Shift Assignments for Dok1 PTB domain PubMed: 18156175
Deposition date: 2007-11-09 Original release date: 2008-01-09
Authors: Oxley, Camilla; Vakonakis, Ioannis; Wegener, Kate; Campbell, Iain
Citation: Oxley, Camilla; Anthis, Nicholas; Lowe, Edward; Vakonakis, Ioannis; Campbell, Iain; Wegener, Kate. "An integrin phosphorylation switch: the effect of beta3 integrin tail phosphorylation on DOK1 and talin binding." J. Biol. Chem. 283, 5420-5426 (2008).
Assembly members:
Dok1, polymer, 108 residues, 12087.7 Da.
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pGEX 6P2
Entity Sequences (FASTA):
Dok1: GPLGSQFWVTVQRTEAAERC
GLHGSYVLRVEAERLTLLTV
GAQSQILEPLLSWWYTLLRR
YGRDKVMFSFEAGRRCPSGP
GTFTFQTAQGNDIFQAVETA
IHRQKAQG
- assigned_chemical_shifts
Data type | Count |
15N chemical shifts | 113 |
1H chemical shifts | 119 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | Dok1 | 1 |
Entities:
Entity 1, Dok1 108 residues - 12087.7 Da.
1 | GLY | PRO | LEU | GLY | SER | GLN | PHE | TRP | VAL | THR | ||||
2 | VAL | GLN | ARG | THR | GLU | ALA | ALA | GLU | ARG | CYS | ||||
3 | GLY | LEU | HIS | GLY | SER | TYR | VAL | LEU | ARG | VAL | ||||
4 | GLU | ALA | GLU | ARG | LEU | THR | LEU | LEU | THR | VAL | ||||
5 | GLY | ALA | GLN | SER | GLN | ILE | LEU | GLU | PRO | LEU | ||||
6 | LEU | SER | TRP | TRP | TYR | THR | LEU | LEU | ARG | ARG | ||||
7 | TYR | GLY | ARG | ASP | LYS | VAL | MET | PHE | SER | PHE | ||||
8 | GLU | ALA | GLY | ARG | ARG | CYS | PRO | SER | GLY | PRO | ||||
9 | GLY | THR | PHE | THR | PHE | GLN | THR | ALA | GLN | GLY | ||||
10 | ASN | ASP | ILE | PHE | GLN | ALA | VAL | GLU | THR | ALA | ||||
11 | ILE | HIS | ARG | GLN | LYS | ALA | GLN | GLY |
Samples:
sample_1: Dok1 (pH 6.1), [U-100% 13C; U-100% 15N], 1 mM; PBS 50 mM; NaCl 100 mM; DTT 10 mM; D2O 5%; Azide 10%
sample_conditions_1: ionic strength: 100 mM; pH: 6.1; pressure: 1 atm; temperature: 298 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
Software:
NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing
NMR spectrometers:
- Home build Home build 600 MHz
Related Database Links:
BMRB | 19672 |
PDB | |
DBJ | BAD96603 BAG51595 BAG58893 BAJ17765 |
GB | AAB88182 AAC51127 AAI14441 AAX93224 AIC48651 |
REF | NP_001184189 NP_001372 XP_001111248 XP_001161802 XP_002757635 |
SP | Q99704 |
AlphaFold | Q99704 |
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts