BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 16489

Title: NMR structure of pep46 from the infectious bursal disease virus (IBDV) in CD3OH/CDCl3 (1/1)   PubMed: 20385550

Deposition date: 2009-09-10 Original release date: 2010-04-06

Authors: Galloux, Marie; Libersou, Sonia; Alves, Isabel; Marquant, Rodrigue; Salgado, Gilmar; Rezaei, Human; Lepault, Jean; Delmas, Bernard; Bouaziz, Serge; Morellet, Nelly

Citation: Galloux, Marie; Libersou, Sonia; Alves, Isabel; Marquant, Rodrigue; Salgado, Gilmar; Rezaei, Human; Lepault, Jean; Delmas, Bernard; Bouaziz, Serge; Morellet, Nelly. "NMR structure of a viral peptide inserted in artificial membranes: a view on the early steps of the birnavirus entry process."  J. Biol. Chem. 285, 19409-19421 (2010).

Assembly members:
IBDV_pep46, polymer, 46 residues, Formula weight is not available

Natural source:   Common Name: Birnavirus   Taxonomy ID: 39742   Superkingdom: Viruses   Kingdom: not available   Genus/species: Birnavirus not available

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):
IBDV_pep46: FGFKDIIRAIRRIAVPVVST LFPPAAPLAHAIGEGVDYLL GDEAQA

Data sets:
Data typeCount
1H chemical shifts292

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1IBDV_pep461

Entities:

Entity 1, IBDV_pep46 46 residues - Formula weight is not available

1   PHEGLYPHELYSASPILEILEARGALAILE
2   ARGARGILEALAVALPROVALVALSERTHR
3   LEUPHEPROPROALAALAPROLEUALAHIS
4   ALAILEGLYGLUGLYVALASPTYRLEULEU
5   GLYASPGLUALAGLNALA

Samples:

sample_1: IBDV pep46 1 mM

sample_conditions_1: pH: 3.5; pressure: 1 atm; temperature: 293 K

Experiments:

NameSampleSample stateSample conditions
2D DQF-COSYsample_1isotropicsample_conditions_1
2D 1H-1H TOCSYsample_1isotropicsample_conditions_1
2D 1H-1H NOESYsample_1isotropicsample_conditions_1

Software:

X-PLOR v3.84, Brunger - structure solution

NMR spectrometers:

  • Bruker Avance 600 MHz

Related Database Links:

BMRB 15108
PDB
DBJ BAA00391 BAA00740 BAA00741 BAA00745 BAA00954
EMBL CAA27629 CAA34234 CAA58851 CAA63416 CAA79983
GB AAA46238 AAA52086 AAB63594 AAC06016 AAC06017
REF NP_690838
SP P08364 P15480 P22351 P25219 P25220
AlphaFold P15480 P22351 P25219 P25220 P08364