BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 7309

Title: Backbone 1H, 13C, 15N Chemical Shift Assignments for HIV-1 myristoylated matrix protein   PubMed: 16840558

Deposition date: 2006-09-28 Original release date: 2006-10-20

Authors: Saad, Jamil; Miller, Jaime; Tai, Janet; Kim, Andrew; Ghanam, Ruba; Summers, Michael

Citation: Saad, Jamil; Miller, Jaime; Tai, Janet; Kim, Andrew; Ghanam, Ruba; Summers, Michael. "Structural Basis for targeting HIV-1 Gag proteins to the plasma membrane for virus assembly"  Proc. Natl. Acad. Sci. U.S.A. 103, 11364-11369 (2006).

Assembly members:
myristyl matrix protein, polymer, 132 residues, Formula weight is not available

Natural source:   Common Name: HIV-1   Taxonomy ID: 11676   Superkingdom: Viruses   Kingdom: not available   Genus/species: Lentivirus HIV-1

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
myristyl matrix protein: XGARASVLSGGELDKWEKIR LRPGGKKQYKLKHIVWASRE LERFAVNPGLLETSEGCRQI LGQLQPSLQTGSEELRSLYN TIAVLYCVHQRIDVKDTKEA LDKIEEEQNKSKKKAQQAAA DTGNNSQVSQNY

Data sets:
Data typeCount
13C chemical shifts432
15N chemical shifts129
1H chemical shifts765

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1HIV-1 myristoylated Matrix protein1

Entities:

Entity 1, HIV-1 myristoylated Matrix protein 132 residues - Formula weight is not available

1   MYRGLYALAARGALASERVALLEUSERGLY
2   GLYGLULEUASPLYSTRPGLULYSILEARG
3   LEUARGPROGLYGLYLYSLYSGLNTYRLYS
4   LEULYSHISILEVALTRPALASERARGGLU
5   LEUGLUARGPHEALAVALASNPROGLYLEU
6   LEUGLUTHRSERGLUGLYCYSARGGLNILE
7   LEUGLYGLNLEUGLNPROSERLEUGLNTHR
8   GLYSERGLUGLULEUARGSERLEUTYRASN
9   THRILEALAVALLEUTYRCYSVALHISGLN
10   ARGILEASPVALLYSASPTHRLYSGLUALA
11   LEUASPLYSILEGLUGLUGLUGLNASNLYS
12   SERLYSLYSLYSALAGLNGLNALAALAALA
13   ASPTHRGLYASNASNSERGLNVALSERGLN
14   ASNTYR

Samples:

sample_1: Matrix protein, [U-13C; U-15N], 0.3 mM; sodium phosphate 50 mM; DTT 5 mM

conditions_1: pH: 5.5; temperature: 308 K

Experiments:

NameSampleSample stateSample conditions
1H15N HSQCsample_1not availableconditions_1
1H,1H-NOESYsample_1not availableconditions_1
3D 13C-edited NOESYsample_1not availableconditions_1
3D 15N-edited NOESYsample_1not availableconditions_1
4D 13C-,15N-edited NOESYsample_1not availableconditions_1
3D double-half-filtered NOESYsample_1not availableconditions_1

Software:

No software information available

NMR spectrometers:

  • Bruker DRX 600 MHz
  • Bruker DMX 800 MHz

Related Database Links:

BMRB 15114 15116 18715 18716 5316 5960 7250 7267 7275
PDB
DBJ BAF34641 BAG48474
EMBL CBI61180 CBI61181 CBI61182 CBI61183 CBI61184
GB AAA44987 AAB00898 AAB60571 AAC28445 AAC29216
SP P12493 P12497
AlphaFold P12493 P12497

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts