BMRB Entry 50741
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR50741
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Title: Backbone 1H, 15N and 13C chemical shift assignments for HEV ORF1 peptide [1622-1647] (isolate G3-HEV83-2-27) in 20% TFE-d2 PubMed: 34387882
Deposition date: 2021-01-30 Original release date: 2023-02-07
Authors: Cantrelle, Francois-Xavier; Gouttenoire, Jerome; Hanoulle, Xavier
Citation: Oechslin, Noemie; Da Silva, Nathalie; Szkolnicka, Dagmara; Cantrelle, Francois-Xavier; Hanoulle, Xavier; Moradpour, Darius; Gouttenoire, Jerome. "Hepatitis E virus RNA-dependent RNA polymerase is involved in RNA replication and infectious particle production" Hepatology 75, 170-181 (2022).
Assembly members:
entity_1, polymer, 26 residues, Formula weight is not available
Natural source: Common Name: Hepatitis E virus Taxonomy ID: 12461 Superkingdom: Viruses Kingdom: not available Genus/species: Orthohepevirus Orthohepevirus A
Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pHisSUMO-pORF1
Entity Sequences (FASTA):
entity_1: KNWGPGPERAEQLRLAVCDF
LRGLTN
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 76 |
| 15N chemical shifts | 26 |
| 1H chemical shifts | 51 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | ORF1 peptide | 1 |
Entities:
Entity 1, ORF1 peptide 26 residues - Formula weight is not available
Sequence numbering according to the full-length HEV ORF1 polyprotein
| 1 | LYS | ASN | TRP | GLY | PRO | GLY | PRO | GLU | ARG | ALA | ||||
| 2 | GLU | GLN | LEU | ARG | LEU | ALA | VAL | CYS | ASP | PHE | ||||
| 3 | LEU | ARG | GLY | LEU | THR | ASN |
Samples:
sample_1: HEV ORF1 peptide 1622-1647, [U-100% 13C; U-100% 15N], 280 uM; sodium phosphate 50 mM; sodium chloride 150 mM; THP 2 mM; TFE, [U-99% 2H], 20%; TSP 100 uM
sample_conditions_1: ionic strength: 0.15 M; pH: 6.6; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCO | sample_1 | isotropic | sample_conditions_1 |
| 3D HN(CA)CO | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
| 3D HN(CO)CACB | sample_1 | isotropic | sample_conditions_1 |
| 3D HNHA | sample_1 | isotropic | sample_conditions_1 |
Software:
TOPSPIN v4.0.6 - collection
NMRPipe - processing
qMDD - processing
NMRFAM-SPARKY v3.190 - chemical shift assignment, data analysis, peak picking
NMR spectrometers:
- Bruker AVANCE NEO 900 MHz
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts