BMRB Entry 52529

Name: 1H, 13C, and 15N chemical shift assignments for ubiquitin with K27M mutation
Published: 2024-06-28

Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR52529

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C, and 15N chemical shift assignments for ubiquitin with K27M mutation

Deposition date:

2024-06-27

Original release date:

2024-06-28

Authors:

Gardiner, Colin; Wentz, Bryan; Fushman, David

Citation:

Citation: Gardiner, Colin; Wentz, Bryan; Fushman, David. "1H, 13C, and 15N chemical shift assignments for ubiquitin with K27M mutation" Biomol. NMR Assignments ., .-..

Assembly members:

Assembly members:
entity_1, polymer, 76 residues, 8567.86 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET3a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity_1: MQIFVKTLTGKTITLEVEPS DTIENVMAKIQDKEGIPPDQ QRLIFAGKQLEDGRTLSDYN IQKESTLHLVLRLRGG

Data sets:

assigned_chemical_shifts
- assigned_chemical_shifts_1

Data type	Count
13C chemical shifts	212
15N chemical shifts	72
1H chemical shifts	407

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	K27M ubiquitin	1

Entities:

Entity 1, K27M ubiquitin 76 residues - 8567.86 Da.

Ubiquitin with K27M mutation

1

MET

GLN

ILE

PHE

VAL

LYS

THR

LEU

THR

GLY

2

LYS

THR

ILE

THR

LEU

GLU

VAL

GLU

PRO

SER

3

ASP

THR

ILE

GLU

ASN

VAL

MET

ALA

LYS

ILE

4

GLN

ASP

LYS

GLU

GLY

ILE

PRO

ASP

GLN

5

GLN

ARG

LEU

ILE

PHE

ALA

GLY

LYS

GLN

LEU

6

GLU

ASP

GLY

ARG

THR

LEU

SER

ASP

TYR

ASN

7

ILE

GLN

LYS

GLU

SER

THR

LEU

HIS

LEU

VAL

8

LEU

ARG

LEU

ARG

GLY

Samples:

sample_1: sodium phosphate 20 mM; DSS 100 uM; K27M Ubiquitin, [U-99% 13C; U-99% 15N], 300 uM

sample_2: sodium phosphate 20 mM; K27M Ubiquitin, [U-99% 15N], 1 mM; DSS 100 uM

sample_conditions_1: pH: 6.8; pressure: 1 atm; temperature: 300.5 K

Experiments:

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_2	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D 1H-15N TOCSY	sample_2	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_2	isotropic	sample_conditions_1

Software:

NMRFAM-SPARKY v1.470 powered by Sparky 3.190 - chemical shift assignment, peak picking

TOPSPIN v4.07 - NMR data collection, processing of raw NMR data

NMR spectrometers:

Bruker AVANCE III 600 MHz