BMRB Entry 6186
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR6186
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Title: Structure of DNA sequence d-TGATCA by two-dimensional nuclear magnetic resonance spec and restrained molecular dynamics PubMed: 15363786
Deposition date: 2004-04-22 Original release date: 2004-11-08
Authors: Barthwal, R.; Awasthi, P.; Narang, M.; Sharma, U.; Srivastava, N.
Citation: Barthwal, R.; Awasthi, P.; Monica, .; Kaur, M.; Sharma, U.; Srivastava, N.; Barthwal, S.; Govil, G.. "Structure of DNA sequence d-TGATCA by two-dimensional nuclear magnetic resonance spectroscopy and restrained molecular dynamics" J. Struct. Biol. 148, 34-50 (2004).
Assembly members:
TGATCA, polymer, 6 residues, Formula weight is not available
Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
TGATCA: TGATCA
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 47 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | 5'-D(P*TP*GP*AP*TP*CP*A)-3', chain 1 | 1 |
| 2 | 5'-D(P*TP*GP*AP*TP*CP*A)-3', chain 2 | 1 |
Entities:
Entity 1, 5'-D(P*TP*GP*AP*TP*CP*A)-3', chain 1 6 residues - Formula weight is not available
| 1 | DT | DG | DA | DT | DC | DA |
Samples:
sample_1: TGATCA 7.36 mM; phosphate buffer 20 mM; NaCl 15 mM; D2O 100%
sample_2: TGATCA 9.14 mM; phosphate buffer 20 mM; NaCl 15 mM; H2O 90%; D2O 10%
sample_cond_1: ionic strength: 35 mM; pH: 7.0; pressure: 1 atm; temperature: 295 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D NOESY | not available | not available | sample_cond_1 |
| DQF-COSY | not available | not available | sample_cond_1 |
Software:
DISCOVER v97 - refinement
NMR spectrometers:
- Bruker AM 500 MHz