BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 6856

Title: 1H, 13C, and 15N assignments for UDP-N-acetylmuramyl-pentapeptide (PG-P) bound to Peptidoglycan associated lipoprotein (pal) from Haemophilus influenzae or free.   PubMed: 16475801

Deposition date: 2005-10-08 Original release date: 2006-04-24

Authors: Parsons, Lisa; Orban, John

Citation: Parsons, Lisa; Lin, Florence; Orban, John. "Peptidoglycan recognition by pal, an outer membrane lipoprotein"  Biochemistry 45, 2122-2128 (2006).

Assembly members:
UDP-N-acetylmuramyl-L-Ala-D-Glu-m-Dap-D-Ala-D-Ala, polymer, 7 residues, 1200 Da.

Natural source:   Common Name: Escherichia coli   Taxonomy ID: 562   Superkingdom: Eubacteria   Kingdom: not available   Genus/species: Escherichia coli

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
UDP-N-acetylmuramyl-L-Ala-D-Glu-m-Dap-D-Ala-D-Ala: XXAXXXX

Data sets:
Data typeCount
13C chemical shifts37
15N chemical shifts7
1H chemical shifts46

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1PG-P1

Entities:

Entity 1, PG-P 7 residues - 1200 Da.

1   UDPAMUALADGNKCXDALDAL

Samples:

UYPfree: UDP-N-acetylmuramyl-L-Ala-D-Glu-m-Dap-D-Ala-D-Ala, [U-13C; U-15N], 0.8 mM; NaCl 50 mM; PO4 50 mM

conditions_1: pH: 6.7; temperature: 298 K

Experiments:

NameSampleSample stateSample conditions
HCCHTOCSYUYPfreenot availableconditions_1
C13-HSQCUYPfreenot availableconditions_1
2D-TOCSYUYPfreenot availableconditions_1
2D H-C' plane of HNCOUYPfreenot availableconditions_1

Software:

No software information available

NMR spectrometers:

  • Bruker DRX 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts