BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

BMRB Entry 7220

Title: ephrinB2 ectodomain   PubMed: 17061024

Deposition date: 2006-07-10 Original release date: 2006-11-06

Authors: Ran, Xiaoyuan; Fan, Jingsong; Song, Jianxing

Citation: Ran, Xiaoyuan; Fan, Jing-song; Song, Jianxing. "NMR assignment of Human ephrinB2 ectodomain"  J. Biomol. NMR 38, 171-171 (2007).

Assembly members:
ephrinB2 ectodomain, polymer, 151 residues, Formula weight is not available

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo Sapiens

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
ephrinB2 ectodomain: SKSIVLEPIYWNSSNSKFLP GQGLVLYPQIGDKLDIICPK VDSKTVGQYEYYKVYMVDKD QADRCTIKKENTPLLNCAKP DQDIKFTIKFQEFSPNLWGL EFQKNKDYYIISTSNGSLEG LDNQEGGVCQTRAMKILMKV GQDASSAGSTR

Data sets:
Data typeCount
13C chemical shifts561
15N chemical shifts154
1H chemical shifts800

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1ephrinB2 ectodomain monomer1

Entities:

Entity 1, ephrinB2 ectodomain monomer 151 residues - Formula weight is not available

1   SERLYSSERILEVALLEUGLUPROILETYR
2   TRPASNSERSERASNSERLYSPHELEUPRO
3   GLYGLNGLYLEUVALLEUTYRPROGLNILE
4   GLYASPLYSLEUASPILEILECYSPROLYS
5   VALASPSERLYSTHRVALGLYGLNTYRGLU
6   TYRTYRLYSVALTYRMETVALASPLYSASP
7   GLNALAASPARGCYSTHRILELYSLYSGLU
8   ASNTHRPROLEULEUASNCYSALALYSPRO
9   ASPGLNASPILELYSPHETHRILELYSPHE
10   GLNGLUPHESERPROASNLEUTRPGLYLEU
11   GLUPHEGLNLYSASNLYSASPTYRTYRILE
12   ILESERTHRSERASNGLYSERLEUGLUGLY
13   LEUASPASNGLNGLUGLYGLYVALCYSGLN
14   THRARGALAMETLYSILELEUMETLYSVAL
15   GLYGLNASPALASERSERALAGLYSERTHR
16   ARG

Samples:

sample_1: ephrinB2 ectodomain, [U-13C; U-15N], 0.5 mM; phosphate buffer 20 mM

conditions_1: pH: 6.8; temperature: 293 K

Experiments:

NameSampleSample stateSample conditions
1H15N_HSQCsample_1not availableconditions_1
HSQC-TOCSYsample_1not availableconditions_1
HNCACBsample_1not availableconditions_1
CBCA(CO)NHsample_1not availableconditions_1
HNCOsample_1not availableconditions_1
HCCH-TOCSYsample_1not availableconditions_1
(H)CC(CO)NHsample_1not availableconditions_1
H(CCO)NHsample_1not availableconditions_1

Software:

No software information available

NMR spectrometers:

  • Bruker Avance 800 MHz

Related Database Links:

PDB
DBJ BAE21211 BAE21388 BAE22016 BAE24974 BAE25008
EMBL CAJ18588
GB AAA82934 AAA99707 AAA99708 AAC41752 AAC42052
PRF 2108400A 2108400B
REF NP_001100798 NP_001107758 NP_004084 NP_034241 XP_001134800
SP P52799 P52800
TPG DAA23728
AlphaFold P52799 P52800

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts