BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 6725

Title: 1H, 13C and 15N resonance assignments for domain III of the Dengue Virus envelope protein   PubMed: 16222568

Deposition date: 2005-07-05 Original release date: 2005-10-27

Authors: Wu, Chih-wei; Cheng, Jya-Wei

Citation: Wu, Chih-wei; Lin, Yi-Tang; Huang, Kuo-Chun; Cheng, Jya-Wei. "1H, 15N and 13C Resonance Assignments of the Domain III of the Dengue Virus Envelope Protein"  J. Biomol. NMR 33, 76-76 (2005).

Assembly members:
DEN E-D3, polymer, 111 residues, Formula weight is not available

Natural source:   Common Name: Dengue virus   Taxonomy ID: 11060   Superkingdom: Viruses   Kingdom: not available   Genus/species: Flavivirus Dengue virus type 2

Experimental source:   Production method: recombinant technology

Entity Sequences (FASTA):
DEN E-D3: MDKLQLKGMSYSMCTGKFKV VKEIAETQHGTIVIRVQYEG DGSPCKIPFEIMDLEKRHVL GRLITVNPIVTEKDSPVNIE AEPPFGDSYIIIGVEPGQLK LNWFKKGSSLE

Data sets:
Data typeCount
13C chemical shifts420
15N chemical shifts97
1H chemical shifts742

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1Dengue envelop protein domain III1

Entities:

Entity 1, Dengue envelop protein domain III 111 residues - Formula weight is not available

1   METASPLYSLEUGLNLEULYSGLYMETSER
2   TYRSERMETCYSTHRGLYLYSPHELYSVAL
3   VALLYSGLUILEALAGLUTHRGLNHISGLY
4   THRILEVALILEARGVALGLNTYRGLUGLY
5   ASPGLYSERPROCYSLYSILEPROPHEGLU
6   ILEMETASPLEUGLULYSARGHISVALLEU
7   GLYARGLEUILETHRVALASNPROILEVAL
8   THRGLULYSASPSERPROVALASNILEGLU
9   ALAGLUPROPROPHEGLYASPSERTYRILE
10   ILEILEGLYVALGLUPROGLYGLNLEULYS
11   LEUASNTRPPHELYSLYSGLYSERSERLEU
12   GLU

Samples:

DEN_E-D3: DEN E-D3, [U-95% 13C; U-90% 15N], 0.6 ± 0.1 mM; H2O 95%; D2O 5%; Na2HPO4 50 mM; NaCL 100 mM; NaN3 10 mM; EDTA 0.1 mM

DEN_E-D3_NMR_buffer: pH: 6.5; temperature: 293 K

Experiments:

NameSampleSample stateSample conditions
HNCADEN_E-D3not availableDEN_E-D3_NMR_buffer
HNCOCADEN_E-D3not availableDEN_E-D3_NMR_buffer
HNCODEN_E-D3not availableDEN_E-D3_NMR_buffer
HNCACODEN_E-D3not availableDEN_E-D3_NMR_buffer
CBCACONHDEN_E-D3not availableDEN_E-D3_NMR_buffer
HNCACBDEN_E-D3not availableDEN_E-D3_NMR_buffer
HNHADEN_E-D3not availableDEN_E-D3_NMR_buffer
HBHACONHDEN_E-D3not availableDEN_E-D3_NMR_buffer
HBHANHDEN_E-D3not availableDEN_E-D3_NMR_buffer
HC(CO)NHDEN_E-D3not availableDEN_E-D3_NMR_buffer
C(CO)NHDEN_E-D3not availableDEN_E-D3_NMR_buffer
HCCH-TOCSYDEN_E-D3not availableDEN_E-D3_NMR_buffer
15N TOCSY-HSQCDEN_E-D3not availableDEN_E-D3_NMR_buffer
15N NOESY-HSQCDEN_E-D3not availableDEN_E-D3_NMR_buffer
1H15N HSQCDEN_E-D3not availableDEN_E-D3_NMR_buffer

Software:

Xwinnmr v3.5 -

SPARKY -

NMR spectrometers:

  • Bruker Avance 600 MHz

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts