#!/bin/csh

xyz2pipe  -in data/test%03d.fid -x -verb                         \
#   | nmrPipe  -fn POLY -time                                      \
   | nmrPipe  -fn GM -g1 15 -g2 23 -c 0.5  \
   | nmrPipe  -fn ZF -size 1024                                       \
   | nmrPipe  -fn FT                                             \
   | nmrPipe  -fn PS -p0 192.0 -p1 0.0                           \
   | nmrPipe  -fn PS -p0  0.0 -p1 0.0   -di                      \
   | nmrPipe  -fn EXT -x1  -2.0ppm -xn 7.0ppm  -sw -verb  \
   | nmrPipe  -fn TP                                             \
   | nmrPipe  -fn LP -fb     \
   | nmrPipe  -fn GM -g2 35 -c 0.5            \
   | nmrPipe  -fn ZF -size 512                                       \
   | nmrPipe  -fn FT                                             \
   | nmrPipe  -fn PS -p0 0.0 -p1  0.0 -di                       \
#   | nmrPipe  -fn CS  -ls 0.3ppm   -sw                           \
   | nmrPipe  -fn TP                                             \
   | nmrPipe  -fn POLY -auto -ord 0                               \
   | nmrPipe  -fn TP                                    \
   | nmrPipe  -fn POLY -auto -ord 0                        \
   | pipe2xyz -out data/C13_NOESY%03d.ft2 -x -ov

xyz2pipe -in data/C13_NOESY%03d.ft2 -z -verb                        \
   | nmrPipe  -fn LP -fb                                         \
   | nmrPipe  -fn GM -g2 45 -c 0.5            \
   | nmrPipe  -fn ZF -size 256                                       \
   | nmrPipe  -fn FT                                             \
   | nmrPipe  -fn PS -p0 36.0 -p1 0.0 -di                       \
   | nmrPipe  -fn POLY -auto -ord 0                        \
   | pipe2xyz -out data/C13_NOESY%03d.ft3 -z -verb -ov

xyz2pipe -in pipe_processing/C13_NOESY%03d.ft3 -y -verb \
 > d2o_c13_noesy_aliph_lp.ft3

# use below to allow cursor alignment with the hcch_tocsy and cosy in sparky 
# pipe2ucsf -132 c13_noesy_aliph.ft3 c13_noesy_aliph.ucsf