BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
Member of WWPDB

By BMRB ID

CGI API

Use http://bmrb.io/data_library/summary/index.php?bmrbId=ID, for example http://bmrb.io/data_library/summary/index.php?bmrbId=16384 to link to the summary page for BMRB entry 16384.

REST API

Use https://bmrb.io/rest/bmrb/ID/nmr-star3, for example https://bmrb.io/rest/bmrb/16384/nmr-star3 to link to BMRB entry 16384 in the NMR-STAR 3.2 format.

(For completeness,) https://bmrb.io/rest/bmrb/ID/html points to the entry summary webpage. For example https://bmrb.io/rest/bmrb/16384/html.

By PDB ID

Use the database search CGI form on the BMRB homepage. For example, http://bmrb.io/search/simplesearch.php?dbname=PDB&pdbid=1brv&show_bmrbid=on&output=html shows BMRB ID(s) for PDB entry 1BRV.

By residue sequence

Use FASTA search program (CGI form) to find matching residue sequence in BMRB database. http://bmrb.io/data_access/fasta.php?seq_class=protein&sequence=GIVEQCCT lists all BMRB entries for proteins matching GIVEQ in a human-readable form. Accepted values for seq_class parameter are protein and DNA, to search in protein and DNA sequence databases, resp.

To perform FASTA searches against the BMRB database in an automated fashion, please look at the FASTA search endpoint of the BMRB API.

Mirror sites

CGI API will also work at BMRB mirror sites in Osaka, Japan (http://bmrb.protein.osaka-u.ac.jp/) and Florence, Italy (http://bmrb.cerm.unifi.it/).