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BMRBBMRB
About
BMRBBMRB

Citing BMRB

News

About BMRB

  • BMRB Description
  • BMRB Staff
  • BMRB Mission Statement

Mirror sites

  • Connecticut
  • Osaka
  • Florence

Collaborators

  • NMRFAM
  • HTCondor
  • PDBj-BMRB
  • NMRbox

Events

  • ISMAR
  • ICMRBS
  • ENC
  • EUROMAR
  • PANIC

Links

Deposit
BMRBBMRB

About BMRB deposition systems

Data accepted

Data preparation

  • STARch
  • Coordinates versus Assigned chemical shifts
  • Ambiguity code assignment
  • Generate data table

Deposition Systems

  • BMRBDep
  • BMRbig
  • OneDep
  • SMSDep
Search
BMRBBMRB

Advanced search

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Query grid

FASTA search

Visualize
BMRBBMRB

Interactive visualizations (PyBMRB)

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Chemical shift histograms

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Analyze
BMRBBMRB

Validation tools

Statistics and visualizations

  • NMR statistics
  • Chemical shift histograms

Coordinates versus assigned chemical shifts

CS-Rosetta structure calculation

Data
BMRBBMRB

By type

  • Recently released entries
  • Held entries
  • Withdrawn entries
  • Macromolecular types
  • By data available (RDCs, NOEs, etc.)
  • Small molecule structures
  • Time-domain sets
  • Solid-state NMR
  • Unfolded proteins
  • Binding data
  • Entries relating to human diseases
  • Human genes
  • Relational tables
  • NMR Restraints from PDB MR Files
  • Pulse sequences

BMRB API

Bulk data access

  • rsync
  • Globus
  • FTP via HTTPS
Learn
BMRBBMRB

NMR data formats

  • NMR-STAR
  • Other formats

Programmers corner

  • BioMagResBank GitHub page
  • PyNMRSTAR library
  • PyBMRB visualization library

Spectroscopists corner

  • Spectroscopists' Corner
  • Published studies utilizing the BMRB database
  • Defined standards
  • NMR experiments
  • NMR Software
  • Wishart Research Group webservers
  • Academic and commercial software

Educational outreach

  • Molecular highlights
  • Macromolecule NMR
  • Solid state NMR
  • NMR Acronyms
  • Molecular images

NMR nomenclature

  • IUPAC Recommendations 1997
  • IUPAC Recommendations 1998
  • IUPAC Recommendations 2001
  • IUPAC Recommendations 2008

Structural genomics (and SG projects)

BMRBBMRB
BMRB
Searches all entries

Connective Tissue

Disease Protein BMRB entry
Agranulocytosis Granulocyte colony-stimulating factor 18291
Arterial Calcification Calcium bound human S100A11 18425
Atypical hemolytic uremic syndrome CCP modules 10-12 or factor H 18599 18604
Benign cephalic histiocytosis Cytosolic tails of axb2 integrin 18542
Cataracts P23T mutant of human gamma-D crystallin 16173
Tudor domain containing 7 17835
Osteogenesis Imperfecta Type-1 892 protein 17470
Hemophilia B Human fibrillin-1 17334
Hughes syndrome Beta 2 glycoprotein 16639
Hypertension NK1 Autoinhibitory Domain 18398
Lupus erythematosus C-type lectin domain family 4 member D 18415
Marfan syndrome Human fibrillin-1 17334
Neutropenia Granulocyte colony-stimulating factor 18291

Associated Human Genes

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