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Structural genomics (and SG projects)

BMRBBMRB
About
BMRBBMRB

Citing BMRB

News

About BMRB

  • BMRB Description
  • BMRB Staff
  • BMRB Mission Statement

Mirror sites

  • Connecticut
  • Osaka
  • Florence

Collaborators

  • NMRFAM
  • HTCondor
  • PDBj-BMRB
  • NMRbox

Events

  • ISMAR
  • ICMRBS
  • ENC
  • EUROMAR
  • PANIC

Links

Deposit
BMRBBMRB

About BMRB deposition systems

Data accepted

Data preparation

  • STARch
  • Coordinates versus Assigned chemical shifts
  • Ambiguity code assignment
  • Generate data table

Deposition Systems

  • BMRBDep
  • BMRbig
  • OneDep
  • SMSDep
Search
BMRBBMRB

Advanced search

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Query grid

FASTA search

Visualize
BMRBBMRB

Interactive visualizations (PyBMRB)

RBMRB visualizations

Chemical shift histograms

MolProbity results

Analyze
BMRBBMRB

Validation tools

Statistics and visualizations

  • NMR statistics
  • Chemical shift histograms

Coordinates versus assigned chemical shifts

CS-Rosetta structure calculation

Data
BMRBBMRB

By type

  • Recently released entries
  • Held entries
  • Withdrawn entries
  • Macromolecular types
  • By data available (RDCs, NOEs, etc.)
  • Small molecule structures
  • Time-domain sets
  • Solid-state NMR
  • Unfolded proteins
  • Binding data
  • Entries relating to human diseases
  • Human genes
  • Relational tables
  • NMR Restraints from PDB MR Files
  • Pulse sequences

BMRB API

Bulk data access

  • rsync
  • Globus
  • FTP via HTTPS
Learn
BMRBBMRB

NMR data formats

  • NMR-STAR
  • Other formats

Programmers corner

  • BioMagResBank GitHub page
  • PyNMRSTAR library
  • PyBMRB visualization library

Spectroscopists corner

  • Spectroscopists' Corner
  • Published studies utilizing the BMRB database
  • Defined standards
  • NMR experiments
  • NMR Software
  • Wishart Research Group webservers
  • Academic and commercial software

Educational outreach

  • Molecular highlights
  • Macromolecule NMR
  • Solid state NMR
  • NMR Acronyms
  • Molecular images

NMR nomenclature

  • IUPAC Recommendations 1997
  • IUPAC Recommendations 1998
  • IUPAC Recommendations 2001
  • IUPAC Recommendations 2008

Structural genomics (and SG projects)

BMRBBMRB
BMRB
Searches all entries
Gene Home Gene Home

Homolog Data List

Escherichia coli

The following is a list of human genes for which the existing spectroscopy data is from Escherichia coli

Gene Name Chromosome number BMRB EntriesPDB Entries
MAOA X PDB Entries
ARSD X BMRB Entries
SDHB 1
PGM1 1
SDHC 1
PPID 4 BMRB Entries
TRAM2 6
MSRA 8 BMRB Entries
TRAM1 8
GALT 9
NANS 9 PDB Entries
SDHD 11
CSRP2 12
CS 12
STX2 12
EVL 14
GCH1 14 PDB Entries
TRAC 14
CLPX 15 BMRB Entries
EID1 15
NR2E3 15
AARS 16
CYBA 16 PDB Entries
GCSH 16
ZP2 16
PFAS 17
AES 19
CLPP 19 BMRB EntriesPDB Entries
HSCB 22 BMRB EntriesPDB Entries
TRMU 22
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