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Structural genomics (and SG projects)

BMRBBMRB
About
BMRBBMRB

Citing BMRB

News

About BMRB

  • BMRB Description
  • BMRB Staff
  • BMRB Mission Statement

Mirror sites

  • Connecticut
  • Osaka
  • Florence

Collaborators

  • NMRFAM
  • HTCondor
  • PDBj-BMRB
  • NMRbox

Events

  • ISMAR
  • ICMRBS
  • ENC
  • EUROMAR
  • PANIC

Links

Deposit
BMRBBMRB

About BMRB deposition systems

Data accepted

Data preparation

  • STARch
  • Coordinates versus Assigned chemical shifts
  • Ambiguity code assignment
  • Generate data table

Deposition Systems

  • BMRBDep
  • BMRbig
  • OneDep
  • SMSDep
Search
BMRBBMRB

Advanced search

Chemical shift search

Query grid

FASTA search

Visualize
BMRBBMRB

Interactive visualizations (PyBMRB)

RBMRB visualizations

Chemical shift histograms

MolProbity results

Analyze
BMRBBMRB

Validation tools

Statistics and visualizations

  • NMR statistics
  • Chemical shift histograms

Coordinates versus assigned chemical shifts

CS-Rosetta structure calculation

Data
BMRBBMRB

By type

  • Recently released entries
  • Held entries
  • Withdrawn entries
  • Macromolecular types
  • By data available (RDCs, NOEs, etc.)
  • Small molecule structures
  • Time-domain sets
  • Solid-state NMR
  • Unfolded proteins
  • Binding data
  • Entries relating to human diseases
  • Human genes
  • Relational tables
  • NMR Restraints from PDB MR Files
  • Pulse sequences

BMRB API

Bulk data access

  • rsync
  • Globus
  • FTP via HTTPS
Learn
BMRBBMRB

NMR data formats

  • NMR-STAR
  • Other formats

Programmers corner

  • BioMagResBank GitHub page
  • PyNMRSTAR library
  • PyBMRB visualization library

Spectroscopists corner

  • Spectroscopists' Corner
  • Published studies utilizing the BMRB database
  • Defined standards
  • NMR experiments
  • NMR Software
  • Wishart Research Group webservers
  • Academic and commercial software

Educational outreach

  • Molecular highlights
  • Macromolecule NMR
  • Solid state NMR
  • NMR Acronyms
  • Molecular images

NMR nomenclature

  • IUPAC Recommendations 1997
  • IUPAC Recommendations 1998
  • IUPAC Recommendations 2001
  • IUPAC Recommendations 2008

Structural genomics (and SG projects)

BMRBBMRB
BMRB
Searches all entries
Gene Home Gene Home

Metabolic Pathways List


Citric Acid Cycle

Cell Cycle

Associated Genes

Gene Name Chromosome number BMRB EntriesPDB Entries
FH 1 PDB Entries
SDHC 1
SDHB 1
SUCLG1 2
COX5B 2
IDH1 2 PDB Entries
MDH1 2
PDK1 2 PDB Entries
PDHB 3 PDB Entries
UQCRC1 3
NNT 5 BMRB EntriesPDB Entries
NDUFA2 5 PDB Entries
DLD 7 PDB Entries
PDK4 7 PDB Entries
OGDH 7 PDB Entries
MDH2 7 PDB Entries
BPGM 7 PDB Entries
CYCS 7 PDB Entries
UQCRB 8
ACO1 9 PDB Entries
SDHD 11
LDHA 11 PDB Entries
DLAT 11 PDB Entries
PDHX 11 PDB Entries
UCP2 11 BMRB Entries
CS 12
LDHB 12 PDB Entries
IDH2 15 PDB Entries
COX5A 15
ETFA 15 PDB Entries
UQCRC2 16
NDUFAB1 16 PDB Entries
PDK2 17 PDB Entries
ATP5H 17
ETFB 19 PDB Entries
BSG 19 PDB Entries
ATP5J 21
ATP5O 21
UQCR10 22

See also:

  • REACTOME
  • Other BMRB Information
  • KEGG
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