BMRB Entry 6572
Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR6572
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Title: Backbone Amide Assignments of the Cytochrome c3 in Fully Oxidized State from D. vulgaris Miyazaki F PubMed: 16460012
Deposition date: 2005-03-29 Original release date: 2007-01-29
Authors: Yahata, Naoki; Saitoh, Takashi; Takayama, Yuki; Ozawa, Kiyoshi; Ogata, Hideaki; Higuchi, Yoshiki; Akutsu, Hideo
Citation: Yahata, Naoki; Saitoh, Takashi; Takayama, Yuki; Ozawa, Kiyoshi; Ogata, Hideaki; Higuchi, Yoshiki; Akutsu, Hideo. "Redox Interaction of Cytochrome c(3) with [NiFe] Hydrogenase from Desulfovibrio vulgaris Miyazaki F." Biochemistry 45, 1653-1662 (2006).
Assembly members:
cytochrome c3, polymer, 107 residues, Formula weight is not available
HEM, non-polymer, 616.487 Da.
Natural source: Common Name: D. vulgaris Miyazaki F Taxonomy ID: 883 Superkingdom: Bacteria Kingdom: not available Genus/species: Desulfovibrio vulgaris
Experimental source: Production method: Purified from natural source and recombinant technology
Entity Sequences (FASTA):
cytochrome c3: APKAPADGLKMDKTKQPVVF
NHSTHKAVKCGDCHHPVNGK
EDYQKCATAGCHDNMDKKDK
SAKGYYHAMHDKGTKFKSCV
GCHLETAGADAAKKKELTGC
KGSKCHS
- assigned_chemical_shifts
Data type | Count |
15N chemical shifts | 101 |
1H chemical shifts | 101 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | Cytochrome c3 | 1 |
2 | PROTOPORPHYRIN IX CONTAINING FE 1 | 2 |
3 | PROTOPORPHYRIN IX CONTAINING FE 2 | 2 |
4 | PROTOPORPHYRIN IX CONTAINING FE 3 | 2 |
5 | PROTOPORPHYRIN IX CONTAINING FE 4 | 2 |
Entities:
Entity 1, Cytochrome c3 107 residues - Formula weight is not available
1 | ALA | PRO | LYS | ALA | PRO | ALA | ASP | GLY | LEU | LYS | ||||
2 | MET | ASP | LYS | THR | LYS | GLN | PRO | VAL | VAL | PHE | ||||
3 | ASN | HIS | SER | THR | HIS | LYS | ALA | VAL | LYS | CYS | ||||
4 | GLY | ASP | CYS | HIS | HIS | PRO | VAL | ASN | GLY | LYS | ||||
5 | GLU | ASP | TYR | GLN | LYS | CYS | ALA | THR | ALA | GLY | ||||
6 | CYS | HIS | ASP | ASN | MET | ASP | LYS | LYS | ASP | LYS | ||||
7 | SER | ALA | LYS | GLY | TYR | TYR | HIS | ALA | MET | HIS | ||||
8 | ASP | LYS | GLY | THR | LYS | PHE | LYS | SER | CYS | VAL | ||||
9 | GLY | CYS | HIS | LEU | GLU | THR | ALA | GLY | ALA | ASP | ||||
10 | ALA | ALA | LYS | LYS | LYS | GLU | LEU | THR | GLY | CYS | ||||
11 | LYS | GLY | SER | LYS | CYS | HIS | SER |
Entity 2, PROTOPORPHYRIN IX CONTAINING FE 1 - C34 H32 Fe N4 O4 - 616.487 Da.
1 | HEM |
Samples:
sample_1: cytochrome c3, [U-90% 15N], 2 ± 0.1 mM; PROTOPORPHYRIN IX CONTAINING FE 8 ± 0.1 mM; sodium-phosphate 30 ± 3 mM; deuterium oxide 10%; water 90%
conditions_1: pH: 6.0
conditions_2: pH: 7.0; temperature: 303 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
1H-15N HSQC | sample_1 | not available | not available |
1H-15N NOESY-HSQC | sample_1 | not available | not available |
1H-15N TOCSY-HSQC | sample_1 | not available | not available |
Software:
No software information available
NMR spectrometers:
- Bruker DRX 600.13 MHz
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts