BMRB Entry 10293

Name: Solution structure of the homeobox domain of LIM/homeobox protein Lhx9
Published: 2009-12-17

Click here to enlarge.

PDB ID: 2dmq
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR10293
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Solution structure of the homeobox domain of LIM/homeobox protein Lhx9

Deposition date:

2008-12-17

Original release date:

2009-12-17

Authors:

Ohnishi, S.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Ohnishi, S.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the homeobox domain of LIM/homeobox protein Lhx9" .

Assembly members:

Assembly members:
homeobox domain, polymer, 80 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Vector: P050613-31

Entity Sequences (FASTA):

Entity Sequences (FASTA):
homeobox domain: GSSGSSGKRMRTSFKHHQLR TMKSYFAINHNPDAKDLKQL AQKTGLTKRVLQVWFQNARA KFRRNLLRQENGGVSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	309
15N chemical shifts	73
1H chemical shifts	481

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	homeobox domain	1

Entities:

Entity 1, homeobox domain 80 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	LYS	ARG	MET
2	ARG	THR	SER	PHE	LYS	HIS	HIS	GLN	LEU	ARG
3	THR	MET	LYS	SER	TYR	PHE	ALA	ILE	ASN	HIS
4	ASN	PRO	ASP	ALA	LYS	ASP	LEU	LYS	GLN	LEU
5	ALA	GLN	LYS	THR	GLY	LEU	THR	LYS	ARG	VAL
6	LEU	GLN	VAL	TRP	PHE	GLN	ASN	ALA	ARG	ALA
7	LYS	PHE	ARG	ARG	ASN	LEU	LEU	ARG	GLN	GLU
8	ASN	GLY	GLY	VAL	SER	GLY	PRO	SER	SER	GLY

Name	Sample	Sample state	Sample conditions
3D 13C-separated NOESY	sample_1	isotropic	condition_1
3D 15N-separated NOESY	sample_1	isotropic	condition_1

PDB	2DMQ
DBJ	BAA21846 BAC04371 BAC35432 BAE45355 BAF46217
EMBL	CAB59907 CAB59908 CAB59909 CAB97493 CAB98128
GB	AAA50258 AAB08752 AAD20012 AAD20013 AAD22008
REF	NP_001014434 NP_001017710 NP_001019715 NP_001020736 NP_001032320
SP	A0JNI8 A2I8Z7 P50458 Q1LWV4 Q68EY3
TPG	DAA20966 DAA24308
AlphaFold	A0JNI8 A2I8Z7 P50458 Q1LWV4 Q68EY3

BMRB Entry 10293

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	SER	SER	GLY	SER	SER	GLY	LYS	ARG	MET
2	ARG	THR	SER	PHE	LYS	HIS	HIS	GLN	LEU	ARG
3	THR	MET	LYS	SER	TYR	PHE	ALA	ILE	ASN	HIS
4	ASN	PRO	ASP	ALA	LYS	ASP	LEU	LYS	GLN	LEU
5	ALA	GLN	LYS	THR	GLY	LEU	THR	LYS	ARG	VAL
6	LEU	GLN	VAL	TRP	PHE	GLN	ASN	ALA	ARG	ALA
7	LYS	PHE	ARG	ARG	ASN	LEU	LEU	ARG	GLN	GLU
8	ASN	GLY	GLY	VAL	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	LYS	ARG	MET
2	ARG	THR	SER	PHE	LYS	HIS	HIS	GLN	LEU	ARG
3	THR	MET	LYS	SER	TYR	PHE	ALA	ILE	ASN	HIS
4	ASN	PRO	ASP	ALA	LYS	ASP	LEU	LYS	GLN	LEU
5	ALA	GLN	LYS	THR	GLY	LEU	THR	LYS	ARG	VAL
6	LEU	GLN	VAL	TRP	PHE	GLN	ASN	ALA	ARG	ALA
7	LYS	PHE	ARG	ARG	ASN	LEU	LEU	ARG	GLN	GLU
8	ASN	GLY	GLY	VAL	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	LYS	ARG	MET
2	ARG	THR	SER	PHE	LYS	HIS	HIS	GLN	LEU	ARG
3	THR	MET	LYS	SER	TYR	PHE	ALA	ILE	ASN	HIS
4	ASN	PRO	ASP	ALA	LYS	ASP	LEU	LYS	GLN	LEU
5	ALA	GLN	LYS	THR	GLY	LEU	THR	LYS	ARG	VAL
6	LEU	GLN	VAL	TRP	PHE	GLN	ASN	ALA	ARG	ALA
7	LYS	PHE	ARG	ARG	ASN	LEU	LEU	ARG	GLN	GLU
8	ASN	GLY	GLY	VAL	SER	GLY	PRO	SER	SER	GLY