BMRB Entry 10318

Name: Solution structure of the PTB domain of KIAA1075 protein from human
Published: 2010-03-11

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PDB ID: 2dkq
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR10318
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the PTB domain of KIAA1075 protein from human

Deposition date:

2009-03-11

Original release date:

2010-03-11

Authors:

Li, H.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Li, H.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the PTB domain of KIAA1075 protein from human" .

Assembly members:

Assembly members:
PTB domain, polymer, 160 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: Cell free synthesis Vector: P050829-22

Entity Sequences (FASTA):

Entity Sequences (FASTA):
PTB domain: GSSGSSGMSTAADLLRQGAA CSVLYLTSVETESLTGPQAV ARASSAALSCSPRPTPAVVH FKVSAQGITLTDNQRKLFFR RHYPVNSITFSSTDPQDRRW TNPDGTTSKIFGFVAKKPGS PWENVCHLFAELDPDQPAGA IVTFITKVLLGQRKSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	653
15N chemical shifts	148
1H chemical shifts	1031

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	PTB domain	1

Entities:

Entity 1, PTB domain 160 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	MET	SER	THR
2	ALA	ALA	ASP	LEU	LEU	ARG	GLN	GLY	ALA	ALA
3	CYS	SER	VAL	LEU	TYR	LEU	THR	SER	VAL	GLU
4	THR	GLU	SER	LEU	THR	GLY	PRO	GLN	ALA	VAL
5	ALA	ARG	ALA	SER	SER	ALA	ALA	LEU	SER	CYS
6	SER	PRO	ARG	PRO	THR	PRO	ALA	VAL	VAL	HIS
7	PHE	LYS	VAL	SER	ALA	GLN	GLY	ILE	THR	LEU
8	THR	ASP	ASN	GLN	ARG	LYS	LEU	PHE	PHE	ARG
9	ARG	HIS	TYR	PRO	VAL	ASN	SER	ILE	THR	PHE
10	SER	SER	THR	ASP	PRO	GLN	ASP	ARG	ARG	TRP
11	THR	ASN	PRO	ASP	GLY	THR	THR	SER	LYS	ILE
12	PHE	GLY	PHE	VAL	ALA	LYS	LYS	PRO	GLY	SER
13	PRO	TRP	GLU	ASN	VAL	CYS	HIS	LEU	PHE	ALA
14	GLU	LEU	ASP	PRO	ASP	GLN	PRO	ALA	GLY	ALA
15	ILE	VAL	THR	PHE	ILE	THR	LYS	VAL	LEU	LEU
16	GLY	GLN	ARG	LYS	SER	GLY	PRO	SER	SER	GLY

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

BMRB	17364
PDB	2DKQ 2LOZ 3HQC
DBJ	BAA83027 BAG09960 BAG54765
EMBL	CAB70815 CAH56176
GB	AAH54099 AAI10855 AAI29829 AAI29830 AAI31504
REF	NP_056134 NP_736610 NP_938072 XP_001102202 XP_001790253
SP	Q63HR2
TPG	DAA29990
AlphaFold	Q63HR2

BMRB Entry 10318

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	SER	SER	GLY	SER	SER	GLY	MET	SER	THR
2	ALA	ALA	ASP	LEU	LEU	ARG	GLN	GLY	ALA	ALA
3	CYS	SER	VAL	LEU	TYR	LEU	THR	SER	VAL	GLU
4	THR	GLU	SER	LEU	THR	GLY	PRO	GLN	ALA	VAL
5	ALA	ARG	ALA	SER	SER	ALA	ALA	LEU	SER	CYS
6	SER	PRO	ARG	PRO	THR	PRO	ALA	VAL	VAL	HIS
7	PHE	LYS	VAL	SER	ALA	GLN	GLY	ILE	THR	LEU
8	THR	ASP	ASN	GLN	ARG	LYS	LEU	PHE	PHE	ARG
9	ARG	HIS	TYR	PRO	VAL	ASN	SER	ILE	THR	PHE
10	SER	SER	THR	ASP	PRO	GLN	ASP	ARG	ARG	TRP
11	THR	ASN	PRO	ASP	GLY	THR	THR	SER	LYS	ILE
12	PHE	GLY	PHE	VAL	ALA	LYS	LYS	PRO	GLY	SER
13	PRO	TRP	GLU	ASN	VAL	CYS	HIS	LEU	PHE	ALA
14	GLU	LEU	ASP	PRO	ASP	GLN	PRO	ALA	GLY	ALA
15	ILE	VAL	THR	PHE	ILE	THR	LYS	VAL	LEU	LEU
16	GLY	GLN	ARG	LYS	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	MET	SER	THR
2	ALA	ALA	ASP	LEU	LEU	ARG	GLN	GLY	ALA	ALA
3	CYS	SER	VAL	LEU	TYR	LEU	THR	SER	VAL	GLU
4	THR	GLU	SER	LEU	THR	GLY	PRO	GLN	ALA	VAL
5	ALA	ARG	ALA	SER	SER	ALA	ALA	LEU	SER	CYS
6	SER	PRO	ARG	PRO	THR	PRO	ALA	VAL	VAL	HIS
7	PHE	LYS	VAL	SER	ALA	GLN	GLY	ILE	THR	LEU
8	THR	ASP	ASN	GLN	ARG	LYS	LEU	PHE	PHE	ARG
9	ARG	HIS	TYR	PRO	VAL	ASN	SER	ILE	THR	PHE
10	SER	SER	THR	ASP	PRO	GLN	ASP	ARG	ARG	TRP
11	THR	ASN	PRO	ASP	GLY	THR	THR	SER	LYS	ILE
12	PHE	GLY	PHE	VAL	ALA	LYS	LYS	PRO	GLY	SER
13	PRO	TRP	GLU	ASN	VAL	CYS	HIS	LEU	PHE	ALA
14	GLU	LEU	ASP	PRO	ASP	GLN	PRO	ALA	GLY	ALA
15	ILE	VAL	THR	PHE	ILE	THR	LYS	VAL	LEU	LEU
16	GLY	GLN	ARG	LYS	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	MET	SER	THR
2	ALA	ALA	ASP	LEU	LEU	ARG	GLN	GLY	ALA	ALA
3	CYS	SER	VAL	LEU	TYR	LEU	THR	SER	VAL	GLU
4	THR	GLU	SER	LEU	THR	GLY	PRO	GLN	ALA	VAL
5	ALA	ARG	ALA	SER	SER	ALA	ALA	LEU	SER	CYS
6	SER	PRO	ARG	PRO	THR	PRO	ALA	VAL	VAL	HIS
7	PHE	LYS	VAL	SER	ALA	GLN	GLY	ILE	THR	LEU
8	THR	ASP	ASN	GLN	ARG	LYS	LEU	PHE	PHE	ARG
9	ARG	HIS	TYR	PRO	VAL	ASN	SER	ILE	THR	PHE
10	SER	SER	THR	ASP	PRO	GLN	ASP	ARG	ARG	TRP
11	THR	ASN	PRO	ASP	GLY	THR	THR	SER	LYS	ILE
12	PHE	GLY	PHE	VAL	ALA	LYS	LYS	PRO	GLY	SER
13	PRO	TRP	GLU	ASN	VAL	CYS	HIS	LEU	PHE	ALA
14	GLU	LEU	ASP	PRO	ASP	GLN	PRO	ALA	GLY	ALA
15	ILE	VAL	THR	PHE	ILE	THR	LYS	VAL	LEU	LEU
16	GLY	GLN	ARG	LYS	SER	GLY	PRO	SER	SER	GLY