BMRB Entry 11286

Name: Solution structure of the BSD domain of human Synapse associated protein 1
Published: 2011-08-18

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PDB ID: 1x3a
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11286
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the BSD domain of human Synapse associated protein 1

Deposition date:

2010-08-09

Original release date:

2011-08-18

Authors:

Yoneyama, M.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.

Citation:

Citation: Yoneyama, M.; Tochio, N.; Koshiba, S.; Inoue, M.; Kigawa, T.; Yokoyama, S.. "Solution structure of the BSD domain of human Synapse associated protein 1" .

Assembly members:

Assembly members:
BSD domain, polymer, 100 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: P040531-07

Entity Sequences (FASTA):

Entity Sequences (FASTA):
BSD domain: GSSGSSGTNDEETIQQQILA LSADKRNFLRDPPAGVQFNF DFDQMYPVALVMLQEDELLS KMRFALVPKLVKEEVFWRNY FYRVSLIKQSAQLTSGPSSG

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	440
15N chemical shifts	99
1H chemical shifts	685

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	BSD domain	1

Entities:

Entity 1, BSD domain 100 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	THR	ASN	ASP
2	GLU	GLU	THR	ILE	GLN	GLN	GLN	ILE	LEU	ALA
3	LEU	SER	ALA	ASP	LYS	ARG	ASN	PHE	LEU	ARG
4	ASP	PRO	PRO	ALA	GLY	VAL	GLN	PHE	ASN	PHE
5	ASP	PHE	ASP	GLN	MET	TYR	PRO	VAL	ALA	LEU
6	VAL	MET	LEU	GLN	GLU	ASP	GLU	LEU	LEU	SER
7	LYS	MET	ARG	PHE	ALA	LEU	VAL	PRO	LYS	LEU
8	VAL	LYS	GLU	GLU	VAL	PHE	TRP	ARG	ASN	TYR
9	PHE	TYR	ARG	VAL	SER	LEU	ILE	LYS	GLN	SER
10	ALA	GLN	LEU	THR	SER	GLY	PRO	SER	SER	GLY

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

PDB	1X3A
DBJ	BAB55087 BAD96576 BAG37229 BAG58299 BAG64741
EMBL	CAH18697 CAH90135
GB	AAH14657 AAK69273 AAK81893 ACE87132 AIC57513
REF	NP_001125031 NP_116185 XP_001097183 XP_002762707 XP_003819572
SP	Q96A49
AlphaFold	Q96A49

BMRB Entry 11286

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	SER	SER	GLY	SER	SER	GLY	THR	ASN	ASP
2	GLU	GLU	THR	ILE	GLN	GLN	GLN	ILE	LEU	ALA
3	LEU	SER	ALA	ASP	LYS	ARG	ASN	PHE	LEU	ARG
4	ASP	PRO	PRO	ALA	GLY	VAL	GLN	PHE	ASN	PHE
5	ASP	PHE	ASP	GLN	MET	TYR	PRO	VAL	ALA	LEU
6	VAL	MET	LEU	GLN	GLU	ASP	GLU	LEU	LEU	SER
7	LYS	MET	ARG	PHE	ALA	LEU	VAL	PRO	LYS	LEU
8	VAL	LYS	GLU	GLU	VAL	PHE	TRP	ARG	ASN	TYR
9	PHE	TYR	ARG	VAL	SER	LEU	ILE	LYS	GLN	SER
10	ALA	GLN	LEU	THR	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	THR	ASN	ASP
2	GLU	GLU	THR	ILE	GLN	GLN	GLN	ILE	LEU	ALA
3	LEU	SER	ALA	ASP	LYS	ARG	ASN	PHE	LEU	ARG
4	ASP	PRO	PRO	ALA	GLY	VAL	GLN	PHE	ASN	PHE
5	ASP	PHE	ASP	GLN	MET	TYR	PRO	VAL	ALA	LEU
6	VAL	MET	LEU	GLN	GLU	ASP	GLU	LEU	LEU	SER
7	LYS	MET	ARG	PHE	ALA	LEU	VAL	PRO	LYS	LEU
8	VAL	LYS	GLU	GLU	VAL	PHE	TRP	ARG	ASN	TYR
9	PHE	TYR	ARG	VAL	SER	LEU	ILE	LYS	GLN	SER
10	ALA	GLN	LEU	THR	SER	GLY	PRO	SER	SER	GLY

1	GLY	SER	SER	GLY	SER	SER	GLY	THR	ASN	ASP
2	GLU	GLU	THR	ILE	GLN	GLN	GLN	ILE	LEU	ALA
3	LEU	SER	ALA	ASP	LYS	ARG	ASN	PHE	LEU	ARG
4	ASP	PRO	PRO	ALA	GLY	VAL	GLN	PHE	ASN	PHE
5	ASP	PHE	ASP	GLN	MET	TYR	PRO	VAL	ALA	LEU
6	VAL	MET	LEU	GLN	GLU	ASP	GLU	LEU	LEU	SER
7	LYS	MET	ARG	PHE	ALA	LEU	VAL	PRO	LYS	LEU
8	VAL	LYS	GLU	GLU	VAL	PHE	TRP	ARG	ASN	TYR
9	PHE	TYR	ARG	VAL	SER	LEU	ILE	LYS	GLN	SER
10	ALA	GLN	LEU	THR	SER	GLY	PRO	SER	SER	GLY