BMRB Entry 11389

Name: Solution structure of the ARID domain of JARID1D protein
Published: 2011-09-07

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR11389

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution structure of the ARID domain of JARID1D protein

Deposition date:

2010-09-08

Original release date:

2011-09-07

Authors:

Tanabe, W.; Suzuki, S.; Muto, Y.; Inoue, M.; Kigawa, T.; Terada, T.; Shirouzu, M.; Yokoyama, S.

Citation:

Citation: Tanabe, W.; Suzuki, S.; Muto, Y.; Inoue, M.; Kigawa, T.; Terada, T.; Shirouzu, M.; Yokoyama, S.. "Solution structure of the ARID domain of JARID1D protein" .

Assembly members:

Assembly members:
ARID domain, polymer, 100 residues, Formula weight is not available

Natural source:

Natural source: Common Name: human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Vector: P060731-15

Entity Sequences (FASTA):

Entity Sequences (FASTA):
ARID domain: GSSGSSGTRVKLNYLDQIAK FWEIQGSSLKIPNVERKILD LYSLSKIVIEEGGYEAICKD RRWARVAQRLHYPPGKNIGS LLRSHYERIIYPYEMFQSGA

Data sets:

assigned_chemical_shifts
- chemical_shift_1

Data type	Count
13C chemical shifts	445
15N chemical shifts	95
1H chemical shifts	702

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	ARID domain	1

Entities:

Entity 1, ARID domain 100 residues - Formula weight is not available

1	GLY	SER	SER	GLY	SER	SER	GLY	THR	ARG	VAL
2	LYS	LEU	ASN	TYR	LEU	ASP	GLN	ILE	ALA	LYS
3	PHE	TRP	GLU	ILE	GLN	GLY	SER	SER	LEU	LYS
4	ILE	PRO	ASN	VAL	GLU	ARG	LYS	ILE	LEU	ASP
5	LEU	TYR	SER	LEU	SER	LYS	ILE	VAL	ILE	GLU
6	GLU	GLY	GLY	TYR	GLU	ALA	ILE	CYS	LYS	ASP
7	ARG	ARG	TRP	ALA	ARG	VAL	ALA	GLN	ARG	LEU
8	HIS	TYR	PRO	PRO	GLY	LYS	ASN	ILE	GLY	SER
9	LEU	LEU	ARG	SER	HIS	TYR	GLU	ARG	ILE	ILE
10	TYR	PRO	TYR	GLU	MET	PHE	GLN	SER	GLY	ALA

Name	Sample	Sample state	Sample conditions
3D 15N-separated NOESY	sample_1	isotropic	condition_1
3D 13C-separated NOESY	sample_1	isotropic	condition_1

PDB	2YQE
DBJ	BAG64942
EMBL	CAH90475
GB	AAC48699 AAC50806 AAC51135 AAG00951 AAI32722
REF	NP_001008975 NP_001140177 NP_004644 XP_005262617 XP_005262618
SP	Q5XUN4 Q9BY66
AlphaFold	Q5XUN4 Q9BY66

BMRB Entry 11389

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	GLY	SER	SER	GLY	SER	SER	GLY	THR	ARG	VAL
2	LYS	LEU	ASN	TYR	LEU	ASP	GLN	ILE	ALA	LYS
3	PHE	TRP	GLU	ILE	GLN	GLY	SER	SER	LEU	LYS
4	ILE	PRO	ASN	VAL	GLU	ARG	LYS	ILE	LEU	ASP
5	LEU	TYR	SER	LEU	SER	LYS	ILE	VAL	ILE	GLU
6	GLU	GLY	GLY	TYR	GLU	ALA	ILE	CYS	LYS	ASP
7	ARG	ARG	TRP	ALA	ARG	VAL	ALA	GLN	ARG	LEU
8	HIS	TYR	PRO	PRO	GLY	LYS	ASN	ILE	GLY	SER
9	LEU	LEU	ARG	SER	HIS	TYR	GLU	ARG	ILE	ILE
10	TYR	PRO	TYR	GLU	MET	PHE	GLN	SER	GLY	ALA

1	GLY	SER	SER	GLY	SER	SER	GLY	THR	ARG	VAL
2	LYS	LEU	ASN	TYR	LEU	ASP	GLN	ILE	ALA	LYS
3	PHE	TRP	GLU	ILE	GLN	GLY	SER	SER	LEU	LYS
4	ILE	PRO	ASN	VAL	GLU	ARG	LYS	ILE	LEU	ASP
5	LEU	TYR	SER	LEU	SER	LYS	ILE	VAL	ILE	GLU
6	GLU	GLY	GLY	TYR	GLU	ALA	ILE	CYS	LYS	ASP
7	ARG	ARG	TRP	ALA	ARG	VAL	ALA	GLN	ARG	LEU
8	HIS	TYR	PRO	PRO	GLY	LYS	ASN	ILE	GLY	SER
9	LEU	LEU	ARG	SER	HIS	TYR	GLU	ARG	ILE	ILE
10	TYR	PRO	TYR	GLU	MET	PHE	GLN	SER	GLY	ALA

1	GLY	SER	SER	GLY	SER	SER	GLY	THR	ARG	VAL
2	LYS	LEU	ASN	TYR	LEU	ASP	GLN	ILE	ALA	LYS
3	PHE	TRP	GLU	ILE	GLN	GLY	SER	SER	LEU	LYS
4	ILE	PRO	ASN	VAL	GLU	ARG	LYS	ILE	LEU	ASP
5	LEU	TYR	SER	LEU	SER	LYS	ILE	VAL	ILE	GLU
6	GLU	GLY	GLY	TYR	GLU	ALA	ILE	CYS	LYS	ASP
7	ARG	ARG	TRP	ALA	ARG	VAL	ALA	GLN	ARG	LEU
8	HIS	TYR	PRO	PRO	GLY	LYS	ASN	ILE	GLY	SER
9	LEU	LEU	ARG	SER	HIS	TYR	GLU	ARG	ILE	ILE
10	TYR	PRO	TYR	GLU	MET	PHE	GLN	SER	GLY	ALA