BMRB Entry 15092

Name: 1H, 13C, 15N chemical shift assignments for the human E2 ubiquitin conjugating enzyme Ubc13
Published: 2007-04-24

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR15092

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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

1H, 13C, 15N chemical shift assignments for the human E2 ubiquitin conjugating enzyme Ubc13

Deposition date:

2007-01-03

Original release date:

2007-04-24

Authors:

Mercier, Pascal; Lewis, Michael; Hau, D.; Saltibus, Linda; Xiao, Wei; Spyracopoulos, Leo

Citation:

Citation: Mercier, Pascal; Lewis, Michael; Hau, D.; Saltibus, Linda; Xiao, Wei; Spyracopoulos, Leo. "Structure, Interactions, and Dynamics of the RING Domain from Human TRAF6" Protein Sci. 16, 602-614 (2007).
PubMed: 17327397

Assembly members:

Assembly members:
Ubc13, polymer, 157 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pGEX6P1

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Ubc13: GPLGSMAGLPRRIIKETQRL LAEPVPGIKAEPDESNARYF HVVIAGPQDSPFEGGTFKLE LFLPEEYPMAAPKVRFMTKI YHPNVDKLGRICLDILKDKW SPALQIRTVLLSIQALLSAP NPDDPLANDVAEQWKTNEAQ AIETARAWTRLYAMNNI

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	423
15N chemical shifts	124
1H chemical shifts	721

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Ubc13	1

Entities:

Entity 1, Ubc13 157 residues - Formula weight is not available

Residues 1-5 represent a cloning artifact from an affinity tag

1

GLY

PRO

LEU

GLY

SER

MET

ALA

GLY

LEU

PRO

2

ARG

ILE

LYS

GLU

THR

GLN

ARG

LEU

3

LEU

ALA

GLU

PRO

VAL

PRO

GLY

ILE

LYS

ALA

4

GLU

PRO

ASP

GLU

SER

ASN

ALA

ARG

TYR

PHE

5

HIS

VAL

ILE

ALA

GLY

PRO

GLN

ASP

SER

6

PRO

PHE

GLU

GLY

THR

PHE

LYS

LEU

GLU

7

LEU

PHE

LEU

PRO

GLU

TYR

PRO

MET

ALA

8

ALA

PRO

LYS

VAL

ARG

PHE

MET

THR

LYS

ILE

9

TYR

HIS

PRO

ASN

VAL

ASP

LYS

LEU

GLY

ARG

10

ILE

CYS

LEU

ASP

ILE

LEU

LYS

ASP

LYS

TRP

11

SER

PRO

ALA

LEU

GLN

ILE

ARG

THR

VAL

LEU

12

LEU

SER

ILE

GLN

ALA

LEU

SER

ALA

PRO

13

ASN

PRO

ASP

PRO

LEU

ALA

ASN

ASP

VAL

14

ALA

GLU

GLN

TRP

LYS

THR

ASN

GLU

ALA

GLN

15

ALA

ILE

GLU

THR

ALA

ARG

ALA

TRP

THR

ARG

16

LEU

TYR

ALA

MET

ASN

ILE

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1

PDB	1J7D 2C2V 3HCT 3HCU 3VON 3W31 4DHI 4DHJ 4DHZ 4IP3 4NR3 4NRG 4NRI 4ONM 4ONN 4ORH 4TKP 4WHV 5AIT 5AIU
DBJ	BAA11675 BAB20414 BAB23941 BAB24239 BAE01994
EMBL	CAA71001 CAH65129 CAH92264 CAJ82488 CAK04885
GB	AAH00396 AAH03365 AAH34898 AAH44461 AAH53141
REF	NP_001012828 NP_001069726 NP_001127530 NP_001156530 NP_001180523
SP	P61088 P61089 Q0P5K3 Q4R4I1 Q5R7J6
TPG	DAA30062
AlphaFold	P61088 P61089 Q0P5K3 Q4R4I1 Q5R7J6

BMRB Entry 15092

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

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