BMRB Entry 15219

Title:
Backbone 1H, 15N and 13C chemical shift assingments for human retinoid X receptor ligand-binding domain in complex with 9-cis retinoic acid and a glucocorticoid receptor interacting protein-1 peptide
Deposition date:
2007-04-19
Original release date:
2008-02-20
Authors:
Lu, Jianyun; Chen, Minghe; DeKoster, Gregory; Cistola, David; Li, Ellen
Citation:

Citation: Lu, Jianyun; Chen, Minghe; DeKoster, Gregory; Cistola, David; Li, Ellen. "The RXRalpha C-terminus T462 is a NMR sensor for coactivator peptide binding"  Biochem. Biophys. Res. Commun. 366, 932-937 (2008).
PubMed: 18088598

Assembly members:

Assembly members:
RXRalpha_LBD, polymer, 244 residues, 27235.5 Da.
GRIP1_NR_Box_2, polymer, 13 residues, 1574.8 Da.
REA, non-polymer, 300.435 Da.

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET15b

Data sets:
Data typeCount
13C chemical shifts578
15N chemical shifts182
1H chemical shifts182

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1RXRalpha LBD1
2GRIP1 NR Box 22
39-cis-retinoic acid3

Entities:

Entity 1, RXRalpha LBD 244 residues - 27235.5 Da.

Residues 1-4 represent a non-native affinity tag remnant

1   GLYSERHISMETTHRSERSERALAASNGLU
2   ASPMETPROVALGLUARGILELEUGLUALA
3   GLULEUALAVALGLUPROLYSTHRGLUTHR
4   TYRVALGLUALAASNMETGLYLEUASNPRO
5   SERSERPROASNASPPROVALTHRASNILE
6   CYSGLNALAALAASPLYSGLNLEUPHETHR
7   LEUVALGLUTRPALALYSARGILEPROHIS
8   PHESERGLULEUPROLEUASPASPGLNVAL
9   ILELEULEUARGALAGLYTRPASNGLULEU
10   LEUILEALASERPHESERHISARGSERILE
11   ALAVALLYSASPGLYILELEULEUALATHR
12   GLYLEUHISVALHISARGASNSERALAHIS
13   SERALAGLYVALGLYALAILEPHEASPARG
14   VALLEUTHRGLULEUVALSERLYSMETARG
15   ASPMETGLNMETASPLYSTHRGLULEUGLY
16   CYSLEUARGALAILEVALLEUPHEASNPRO
17   ASPSERLYSGLYLEUSERASNPROALAGLU
18   VALGLUALALEUARGGLULYSVALTYRALA
19   SERLEUGLUALATYRCYSLYSHISLYSTYR
20   PROGLUGLNPROGLYARGPHEALALYSLEU
21   LEULEUARGLEUPROALALEUARGSERILE
22   GLYLEULYSCYSLEUGLUHISLEUPHEPHE
23   PHELYSLEUILEGLYASPTHRPROILEASP
24   THRPHELEUMETGLUMETLEUGLUALAPRO
25   HISGLNMETTHR

Entity 2, GRIP1 NR Box 2 13 residues - 1574.8 Da.

1   LYSHISLYSILELEUHISARGLEULEUGLN
2   ASPSERSER

Entity 3, 9-cis-retinoic acid - C20 H28 O2 - 300.435 Da.

1   REA

Related Database Links:

PDB 1DKF 1FBY 1FM6 1FM9 1G1U 1G5Y 1K74 1LBD 1MV9 1MVC 1MZN 1RDT 1XDK 1XLS 1XV9 1XVP 2ACL 2P1T 2P1U 2P1V 2ZXZ 2ZY0 3A9E 3DZU 3DZY 3E00 3E94 3FAL 3FC6 3FUG 3H0A 3KWY 3NSP 3NSQ 3OAP 3OZJ 3PCU 3R29 3R2A 3R5M 3UVV 4J5W 4J5X 4K4J 4K6I 4M8E 4M8H 4N5G 4N8R 4NQA 4OC7 4POH 4POJ 4PP3 4PP5 4RFW 4RMC 4RMD 4RME 4ZO1
DBJ BAE26004 BAE73032 BAG54745 BAG72733 BAH02296
EMBL CAA36982 CAA46962 CAL25727 CAL25728 CAL36079
GB AAA40080 AAA42093 AAB36777 AAB36778 AAC95154
PRF 1609194A
REF NP_001277410 NP_001277411 NP_001278849 NP_001278850 NP_001291272
SP P19793 P28700 Q05343
TPG DAA24096
AlphaFold P19793 P28700 Q05343

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks