BMRB Entry 15789

Name: Chemical shift assignments for human MCFD2
Published: 2008-08-28

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR15789

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Chemical shift assignments for human MCFD2

Deposition date:

2008-05-30

Original release date:

2008-08-28

Authors:

Guy, Jodie; Wigren, Edvard; Hard, Torleif; Lindqvist, Ylva

Citation:

Citation: Guy, Jodie; Wigren, Edvard; Svard, Maria; Hard, Torleif; Lindqvist, Ylva. "New insights into multiple coagulation factor deficiency from the solution structure of human MCFD2" J. Mol. Biol. 381, 941-955 (2008).
PubMed: 18590741

Assembly members:

Assembly members:
MCFD2, polymer, 124 residues, Formula weight is not available
CA, non-polymer, 40.078 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET 28

Entity Sequences (FASTA):

Entity Sequences (FASTA):
MCFD2: GSHMEEPAASFSQPGSMGLD KNTVHDQEHIMEHLEGVINK PEAEMSPQELQLHYFKMHDY DGNNLLDGLELSTAITHVHK EEGSEQAPLMSEDELINIID GVLRDDDKNNDGYIDYAEFA KSLQ

Data sets:

assigned_chemical_shifts
- MCFD2_H2O_chemical_shifts_1
- MCFD2_D2O_chemical_shifts

Data type	Count
13C chemical shifts	703
15N chemical shifts	108
1H chemical shifts	1174

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Chain A	1
2	Calcium ion 1	2
3	Calcium ion 2	2

Entities:

Entity 1, Chain A 124 residues - Formula weight is not available

1

GLY

SER

HIS

MET

GLU

PRO

ALA

SER

2

PHE

SER

GLN

PRO

GLY

SER

MET

GLY

LEU

ASP

3

LYS

ASN

THR

VAL

HIS

ASP

GLN

GLU

HIS

ILE

4

MET

GLU

HIS

LEU

GLU

GLY

VAL

ILE

ASN

LYS

5

PRO

GLU

ALA

GLU

MET

SER

PRO

GLN

GLU

LEU

6

GLN

LEU

HIS

TYR

PHE

LYS

MET

HIS

ASP

TYR

7

ASP

GLY

ASN

LEU

ASP

GLY

LEU

GLU

8

LEU

SER

THR

ALA

ILE

THR

HIS

VAL

HIS

LYS

9

GLU

GLY

SER

GLU

GLN

ALA

PRO

LEU

MET

10

SER

GLU

ASP

GLU

LEU

ILE

ASN

ILE

ASP

11

GLY

VAL

LEU

ARG

ASP

LYS

ASN

12

ASP

GLY

TYR

ILE

ASP

TYR

ALA

GLU

PHE

ALA

13

LYS

SER

LEU

GLN

Entity 2, Calcium ion 1 - Ca - 40.078 Da.

1

CA

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_condition_H2O_D2O_samples
2D 1H-13C HSQC	sample_2	isotropic	sample_condition_H2O_D2O_samples
3D CBCA(CO)NH	sample_2	isotropic	sample_condition_H2O_D2O_samples
3D CBCANH	sample_2	isotropic	sample_condition_H2O_D2O_samples
3D HNCO	sample_2	isotropic	sample_condition_H2O_D2O_samples
3D HCCH-COSY	sample_2	isotropic	sample_condition_H2O_D2O_samples
3D 1H-15N TOCSY	sample_1	isotropic	sample_condition_H2O_D2O_samples
3D 1H-15N NOESY	sample_1	isotropic	sample_condition_H2O_D2O_samples
(HB)CB(CGCDCE)HE	sample_2	isotropic	sample_condition_H2O_D2O_samples
3D 13C-edited NOESY	sample_2	isotropic	sample_condition_H2O_D2O_samples
3D 13C-edited NOESY	sample_3	isotropic	sample_condition_D2O_samples

PDB	2VRG 3A4U 3LCP 3WHT 3WHU 3WNX
DBJ	BAF84816
EMBL	CAD38756 CAH18359 CAH90418 CAH91759 CAH91764
GB	AAH37845 AAH40357 AAM28465 AAP23162 AAY15013
REF	NP_001127284 NP_001164977 NP_001164978 NP_001164979 NP_001164980
SP	Q5R8Z6 Q8NI22
AlphaFold	Q5R8Z6 Q8NI22

BMRB Entry 15789

Additional metadata:

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Entities:

Samples:

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