BMRB Entry 16487

Name: Backbone 1H, 15N and 13C chemical shift assignments for HCV-1b Core+1/S polypeptide.
Published: 2010-01-28

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR16487

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone 1H, 15N and 13C chemical shift assignments for HCV-1b Core+1/S polypeptide.

Deposition date:

2009-09-09

Original release date:

2010-01-28

Authors:

Boumlic, Anissa; Nomine, Yves; Kieffer, Bruno; Trave, Gilles

Citation:

Citation: Boumlic, Anissa; Nomine, Yves; Charbonnier, Sebastian; Dalagiorgou, Georgia; Vassilaki, Niki; Kieffer, Bruno; Trave, Gilles; Mavromara, Penelope; Orfanoudakis, Georges. "Prevalence of intrinsic disorder in the hepatitis C virus ARFP/Core+1/S protein." FEBS J. 277, 774-789 (2010).
PubMed: 20067524

Assembly members:

Assembly members:
HCV-1b_Core+1/S, polymer, 60 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Hepatitis C virus Taxonomy ID: 11103 Superkingdom: Viruses Kingdom: not available Genus/species: Hepacivirus Hepatitis C virus

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET-20b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
HCV-1b_Core+1/S: GAMAMRAWGGQDGSCHPVAP GLVGAPMTPGVGRVIWVRSS IPSRAASPTSWGTFRSSAPP

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	157
15N chemical shifts	48
1H chemical shifts	48

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	unit 1	1

Entities:

Entity 1, unit 1 60 residues - Formula weight is not available

Residues -1 and 0 result from the cloning strategy.

1	GLY	ALA	MET	ALA	MET	ARG	ALA	TRP	GLY	GLY
2	GLN	ASP	GLY	SER	CYS	HIS	PRO	VAL	ALA	PRO
3	GLY	LEU	VAL	GLY	ALA	PRO	MET	THR	PRO	GLY
4	VAL	GLY	ARG	VAL	ILE	TRP	VAL	ARG	SER	SER
5	ILE	PRO	SER	ARG	ALA	ALA	SER	PRO	THR	SER
6	TRP	GLY	THR	PHE	ARG	SER	SER	ALA	PRO	PRO

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 16487

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

1	GLY	ALA	MET	ALA	MET	ARG	ALA	TRP	GLY	GLY
2	GLN	ASP	GLY	SER	CYS	HIS	PRO	VAL	ALA	PRO
3	GLY	LEU	VAL	GLY	ALA	PRO	MET	THR	PRO	GLY
4	VAL	GLY	ARG	VAL	ILE	TRP	VAL	ARG	SER	SER
5	ILE	PRO	SER	ARG	ALA	ALA	SER	PRO	THR	SER
6	TRP	GLY	THR	PHE	ARG	SER	SER	ALA	PRO	PRO

1	GLY	ALA	MET	ALA	MET	ARG	ALA	TRP	GLY	GLY
2	GLN	ASP	GLY	SER	CYS	HIS	PRO	VAL	ALA	PRO
3	GLY	LEU	VAL	GLY	ALA	PRO	MET	THR	PRO	GLY
4	VAL	GLY	ARG	VAL	ILE	TRP	VAL	ARG	SER	SER
5	ILE	PRO	SER	ARG	ALA	ALA	SER	PRO	THR	SER
6	TRP	GLY	THR	PHE	ARG	SER	SER	ALA	PRO	PRO

1	GLY	ALA	MET	ALA	MET	ARG	ALA	TRP	GLY	GLY
2	GLN	ASP	GLY	SER	CYS	HIS	PRO	VAL	ALA	PRO
3	GLY	LEU	VAL	GLY	ALA	PRO	MET	THR	PRO	GLY
4	VAL	GLY	ARG	VAL	ILE	TRP	VAL	ARG	SER	SER
5	ILE	PRO	SER	ARG	ALA	ALA	SER	PRO	THR	SER
6	TRP	GLY	THR	PHE	ARG	SER	SER	ALA	PRO	PRO