BMRB Entry 17507

Name: DJ-1 backbone assignment
Published: 2011-03-14

Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR17507

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

DJ-1 backbone assignment

Deposition date:

2011-03-04

Original release date:

2011-03-14

Authors:

Eliezer, David; Malgieri, Gaetano

Citation:

Citation: Malgieri, Gaetano; Eliezer, David. "Structural effects of Parkinson s disease linked DJ-1 mutations" Protein Sci. 17, 855-868 (2008).
PubMed: 18436956

Assembly members:

Assembly members:
DJ-1, polymer, 197 residues, Formula weight is not available

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET24d

Entity Sequences (FASTA):

Entity Sequences (FASTA):
DJ-1: MASKRALVILAKGAEEMETV IPVDVMRRAGIKVTVAGLAG KDPVQCSRDVVICPDASLED AKKEGPYDVVVLPGGNLGAQ NLSESAAVKEILKEQENRKG LIAAICAGPTALLAHEIGFG SKVTTHPLAKDKMMNGGHYT YSENRVEKDGLILTSRGPGT SFEFALAIVEALNGKEVAAQ VKAPLVLKDLEHHHHHH

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	533
15N chemical shifts	171
1H chemical shifts	171

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	DJ-1	1

Entities:

Entity 1, DJ-1 197 residues - Formula weight is not available

1

MET

ALA

SER

LYS

ARG

ALA

LEU

VAL

ILE

LEU

2

ALA

LYS

GLY

ALA

GLU

MET

GLU

THR

VAL

3

ILE

PRO

VAL

ASP

VAL

MET

ARG

ALA

GLY

4

ILE

LYS

VAL

THR

VAL

ALA

GLY

LEU

ALA

GLY

5

LYS

ASP

PRO

VAL

GLN

CYS

SER

ARG

ASP

VAL

6

VAL

ILE

CYS

PRO

ASP

ALA

SER

LEU

GLU

ASP

7

ALA

LYS

GLU

GLY

PRO

TYR

ASP

VAL

8

VAL

LEU

PRO

GLY

ASN

LEU

GLY

ALA

GLN

9

ASN

LEU

SER

GLU

SER

ALA

VAL

LYS

GLU

10

ILE

LEU

LYS

GLU

GLN

GLU

ASN

ARG

LYS

GLY

11

LEU

ILE

ALA

ILE

CYS

ALA

GLY

PRO

THR

12

ALA

LEU

ALA

HIS

GLU

ILE

GLY

PHE

GLY

13

SER

LYS

VAL

THR

HIS

PRO

LEU

ALA

LYS

14

ASP

LYS

MET

ASN

GLY

HIS

TYR

THR

15

TYR

SER

GLU

ASN

ARG

VAL

GLU

LYS

ASP

GLY

16

LEU

ILE

LEU

THR

SER

ARG

GLY

PRO

GLY

THR

17

SER

PHE

GLU

PHE

ALA

LEU

ALA

ILE

VAL

GLU

18

ALA

LEU

ASN

GLY

LYS

GLU

VAL

ALA

GLN

19

VAL

LYS

ALA

PRO

LEU

VAL

LEU

LYS

ASP

LEU

20

GLU

HIS

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_2	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HN(CA)CO	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1

PDB	1J42 1P5F 1PDV 1PDW 1PE0 1Q2U 1SOA 1UCF 2OR3 2R1T 2R1U 2R1V 2RK3 2RK4 2RK6 3B36 3B38 3B3A 3BWE 3CY6 3CYF 3CZ9 3CZA 3EZG 3F71 3SF8 4BTE 4MNT 4MTC 4N0M 4N12 4OGF 4OQ4 4P2G 4P34 4P35 4P36 4RKW 4RKY 4S0Z 4ZGG
DBJ	BAA09603 BAB71781 BAB71782 BAG34938 BAG73513
GB	AAC12806 AAH08188 ACJ13695 ADQ32403 EAW71591
REF	NP_001116849 NP_009193 XP_001158093 XP_001158489 XP_002750288
SP	Q95LI9 Q99497
AlphaFold	Q95LI9 Q99497

BMRB Entry 17507

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links: