BMRB Entry 19231

Name: Structural Basis of DNA Recognition by the Effector Domain of Klebsiella pneumoniae PmrA
Published: 2014-01-21

Click here to enlarge.

PDB ID: 2m87
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR19231
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Structural Basis of DNA Recognition by the Effector Domain of Klebsiella pneumoniae PmrA

Deposition date:

2013-05-07

Original release date:

2014-01-21

Authors:

Wang, Iren; Lou, Yuan-Chao; Chen, Chinpan

Citation:

Citation: Lou, Yuan-Chao; Wang, Iren; Rajasekaran, M.; Kao, Yi-Fen; Ho, Meng-Ru; Hsu, Shang-Te Danny; Chou, Shan-Ho; Wu, Shih-Hsiung; Chen, Chinpan. "Solution structure and tandem DNA recognition of the C-terminal effector domain of PmrA from Klebsiella pneumoniae." Nucleic Acids Res. 42, 4080-4093 (2014).
PubMed: 24371275

Assembly members:

Assembly members:
entity, polymer, 103 residues, 11854.557 Da.

Natural source:

Natural source: Common Name: enterobacteria Taxonomy ID: 573 Superkingdom: Bacteria Kingdom: not available Genus/species: Klebsiella pneumoniae

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET29(+)

Entity Sequences (FASTA):

Entity Sequences (FASTA):
entity: NQGDNEISVGNLRLNVTRRL VWLGETALDLTPKEYALLSR LMMKAGSPVHREILYNDIYS WDNEPATNTLEVHIHNLREK IGKSRIRTVRGFGYMLANNI DTE

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	460
15N chemical shifts	110
1H chemical shifts	737

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	PmrA	1

Entities:

Entity 1, PmrA 103 residues - 11854.557 Da.

1

ASN

GLN

GLY

ASP

ASN

GLU

ILE

SER

VAL

GLY

2

ASN

LEU

ARG

LEU

ASN

VAL

THR

ARG

LEU

3

VAL

TRP

LEU

GLY

GLU

THR

ALA

LEU

ASP

LEU

4

THR

PRO

LYS

GLU

TYR

ALA

LEU

SER

ARG

5

LEU

MET

LYS

ALA

GLY

SER

PRO

VAL

HIS

6

ARG

GLU

ILE

LEU

TYR

ASN

ASP

ILE

TYR

SER

7

TRP

ASP

ASN

GLU

PRO

ALA

THR

ASN

THR

LEU

8

GLU

VAL

HIS

ILE

HIS

ASN

LEU

ARG

GLU

LYS

9

ILE

GLY

LYS

SER

ARG

ILE

ARG

THR

VAL

ARG

10

GLY

PHE

GLY

TYR

MET

LEU

ALA

ASN

ILE

11

ASP

THR

GLU

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC aliphatic	sample_2	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_2	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	sample_2	isotropic	sample_conditions_1
3D 1H-13C NOESY aromatic	sample_2	isotropic	sample_conditions_1

BMRB	26532 26535
PDB	2M87 4S04 4S05
DBJ	BAH62495
EMBL	CCI78009 CCM81779 CCM90377 CCM95353 CCN28862
GB	ABR76243 ACI11257 ADC59454 AEJ97287 AEW60332
REF	WP_002895659 WP_004142095 WP_008805743 WP_016947497 WP_023279685

BMRB Entry 19231

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links: