BMRB Entry 26947

Name: NMR resonance assignments of AIPL1 FKBP in complex with a farnesyl ligand
Published: 2017-04-26

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR26947

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

NMR resonance assignments of AIPL1 FKBP in complex with a farnesyl ligand

Deposition date:

2016-11-18

Original release date:

2017-04-26

Authors:

Yu, Liping; Yadav, Ravi; Artemyev, Nikolai

Citation:

Citation: Yu, Liping; Yadav, Ravi; Artemyev, Nikolai. "NMR resonance assignments of the FKBP domain of human aryl hydrocarbon receptor-interacting protein-like 1 (AIPL1) in complex with a farnesyl ligand" Biomol. NMR Assign. 11, 111-115 (2017).
PubMed: 28236226

Assembly members:

Assembly members:
AIPL1_FKBP, polymer, 152 residues, Formula weight is not available
entity_5U0, non-polymer, 339.536 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET15b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
AIPL1_FKBP: MGHHHHHHGDAALLLNVEGV KKTILHGGTGELPNFITGSR VIFHFRTMKCDEERTVIDDS RQVGQPMHIIIGNMFKLEVW EILLTSMRVHEVAEFWCDTI HTGVYPILSRSLRQMAQGGG GGGGYEDLDELQKEPQPLVF VIELLQVDAPSD

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	505
15N chemical shifts	113
1H chemical shifts	737

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	AIPL1 FKBP	1
2	FC	2

Entities:

Entity 1, AIPL1 FKBP 152 residues - Formula weight is not available

There are 8 residue tag at the N-terminus. Therefore, the numbering starts at -7. Please note that there is a break in real sequence number between 110 and 133 as indicated in the chemical shift file (column 19), i.e. column 19 shows the correct protein sequence numbering for the wild type protein.

1

MET

GLY

HIS

GLY

ASP

2

ALA

LEU

ASN

VAL

GLU

GLY

VAL

3

LYS

THR

ILE

LEU

HIS

GLY

THR

GLY

4

GLU

LEU

PRO

ASN

PHE

ILE

THR

GLY

SER

ARG

5

VAL

ILE

PHE

HIS

PHE

ARG

THR

MET

LYS

CYS

6

ASP

GLU

ARG

THR

VAL

ILE

ASP

SER

7

ARG

GLN

VAL

GLY

GLN

PRO

MET

HIS

ILE

8

ILE

GLY

ASN

MET

PHE

LYS

LEU

GLU

VAL

TRP

9

GLU

ILE

LEU

THR

SER

MET

ARG

VAL

HIS

10

GLU

VAL

ALA

GLU

PHE

TRP

CYS

ASP

THR

ILE

11

HIS

THR

GLY

VAL

TYR

PRO

ILE

LEU

SER

ARG

12

SER

LEU

ARG

GLN

MET

ALA

GLN

GLY

13

GLY

TYR

GLU

ASP

LEU

ASP

GLU

14

LEU

GLN

LYS

GLU

PRO

GLN

PRO

LEU

VAL

PHE

15

VAL

ILE

GLU

LEU

GLN

VAL

ASP

ALA

PRO

16

SER

ASP

Entity 2, FC - C19 H33 N O2 S - 339.536 Da.

1

5U0

Name	Sample	Sample state	Sample conditions
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HN(CO)CACB	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HN(CA)CO	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D C(CO)NH	sample_1	isotropic	sample_conditions_1
3D H(CCO)NH	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_2	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_1	isotropic	sample_conditions_1
3D C13-NOESY	sample_2	isotropic	sample_conditions_1

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 26947

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers: