BMRB Entry 4619

Name: N-terminal zinc-binding HHCC domain of HIV-2 integrase
Published: 2000-12-05

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PDB ID: 1e0e
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR4619
MolProbity Validation Chart

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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

N-terminal zinc-binding HHCC domain of HIV-2 integrase

Deposition date:

2000-03-26

Original release date:

2000-12-05

Authors:

Eijkelenboom, A.; van den Ent, F.; Plasterk, R.; Kaptein, R.; Boelens, R.

Citation:

Citation: Eijkelenboom, A.; van den Ent, F.; Vos, A.; Doreleijers, J.; Hard, K.; Tullius, T.; Plasterk, R.; Kaptein, R.; Boelens, R.. "Solution structure of the N-terminal HHCC domain of HIV-2 integrase: a three-helix bundle stabilized by zinc" Curr. Biol. 7, 739-746 (1997).

Assembly members:

Assembly members:
Human immunodeficiency virus type 2 integrase, polymer, 55 residues, Formula weight is not available
ZN, non-polymer, 65.409 Da.

Natural source:

Natural source: Common Name: HIV-2 Taxonomy ID: 11720 Superkingdom: not available Kingdom: not available Genus/species: not available Human immunodeficiency virus type 2

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: BL21(DE3)

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Human immunodeficiency virus type 2 integrase: FLEKIEPAQEEHEKYHSNVK ELSHKFGIPNLVARQIVNSC AQCQQKGEAIHGQVN

Data sets:

assigned_chemical_shifts
- chem_shift_set_1

Data type	Count
1H chemical shifts	398
15N chemical shifts	62
13C chemical shifts	184

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	HHCC domain of HIV-2 monomer 1	1
2	HHCC domain of HIV-2 monomer 2	1
3	Zn-1	2
4	Zn-2	2

Entities:

Entity 1, HHCC domain of HIV-2 monomer 1 55 residues - Formula weight is not available

1

PHE

LEU

GLU

LYS

ILE

GLU

PRO

ALA

GLN

GLU

2

GLU

HIS

GLU

LYS

TYR

HIS

SER

ASN

VAL

LYS

3

GLU

LEU

SER

HIS

LYS

PHE

GLY

ILE

PRO

ASN

4

LEU

VAL

ALA

ARG

GLN

ILE

VAL

ASN

SER

CYS

5

ALA

GLN

CYS

GLN

LYS

GLY

GLU

ALA

ILE

6

HIS

GLY

GLN

VAL

ASN

Entity 2, Zn-1 - Zn - 65.409 Da.

1

ZN

PDB	1E0E 3F9K
EMBL	CAA08005 CAA08033 CAA08041
GB	AAB00764 ABU88863 ADQ26695 AEI83209 AHI42063
PRF	1306388B
SP	P04584
AlphaFold	P04584

BMRB Entry 4619

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

Name	Sample	Sample state	Sample conditions
2D (1H,15N)-HSQC	not available	not available	sample_cond_1
2D (1H,15N)-HSMQC	not available	not available	sample_cond_1
2D (1H,1H) NOESY	not available	not available	sample_cond_1
2D (1H,1H) TOCSY	not available	not available	sample_cond_1
3D TOCSY (15N,1H) HSQC	not available	not available	sample_cond_1
3D TOCSY (13C,1H) HSQC	not available	not available	sample_cond_1
3D NOESY (15N,1H) HSQC	not available	not available	sample_cond_1
3D NOESY (13C,1H) HSQC	not available	not available	sample_cond_1
3D (13C) HMQC NOESY (13C,1H) HSQC	not available	not available	sample_cond_1
2D 13C-filtered NOESY	not available	not available	sample_cond_1
3D 13C-filtered NOESY (13C,1H) HSQC	not available	not available	sample_cond_1
3D HNCO	not available	not available	sample_cond_1
3D HNCA	not available	not available	sample_cond_1
3D HN(CO)CA	not available	not available	sample_cond_1
3D HNHA	not available	not available	sample_cond_1
3D HNHB	not available	not available	sample_cond_1
3D H(C)CH DIPSI	not available	not available	sample_cond_1
3D HCC(H) DIPSI	not available	not available	sample_cond_1