BMRB Entry 5500

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PDB ID: 1iyf
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full
BMRB Entry DOI: doi:10.13018/BMR5500
MolProbity Validation Chart

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Title:
Parkin binds the Rpn10 subunit of 26S proteasomes with the ubiquitin-like domain
Deposition date:
2002-08-13
Original release date:
2003-03-10
Authors:
Sakata, Eri; Yamaguchi, Yoshiki; Kurimoto, Eiji; Kikuchi, Jun; Yokoyama, Shigeyuki; Kawahara, Hiroyuki; Yokosawa, Hideyoshi; Hattori, Nobutaka; Mizuno, Yoshikuni; Tanaka, Keiji; Kato, Koichi
Citation:

Citation: Sakata, Eri; Yamaguchi, Yoshiki; Kurimoto, Eiji; Kikuchi, Jun; Yokoyama, Shigeyuki; Kawahara, Hiroyuki; Yokosawa, Hideyoshi; Hattori, Nobutaka; Mizuno, Yoshikuni; Tanaka, Keiji; Kato, Koichi. "Parkin binds the Rpn10 subunit of 26S proteasomes with the ubiquitin-like domain"  EMBO Rep. 4, 301-306 (2003).

Assembly members:

Assembly members:
Parkin ubiquitin-like domain, polymer, 81 residues, 9235 Da.

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: GEX6P

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Parkin ubiquitin-like domain: GPLGSMIVFVRFNSSHGFPV EVDSDTSIFQLKEVVAKRQG VPADQLRVIFAGKELRNDWT VQNCDLDQQSIVHIVQRPWR K

Data sets:
Data typeCount
1H chemical shifts148
13C chemical shifts216
15N chemical shifts72

Additional metadata:

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Assembly:

Entity Assembly IDEntity NameEntity ID
1Ubl1

Entities:

Entity 1, Ubl 81 residues - 9235 Da.

1   GLYPROLEUGLYSERMETILEVALPHEVAL
2   ARGPHEASNSERSERHISGLYPHEPROVAL
3   GLUVALASPSERASPTHRSERILEPHEGLN
4   LEULYSGLUVALVALALALYSARGGLNGLY
5   VALPROALAASPGLNLEUARGVALILEPHE
6   ALAGLYLYSGLULEUARGASNASPTRPTHR
7   VALGLNASNCYSASPLEUASPGLNGLNSER
8   ILEVALHISILEVALGLNARGPROTRPARG
9   LYS

Related Database Links:

PDB 1IYF
DBJ BAA25751 BAF43729 BAF85279 BAI46122
EMBL CAH90914
GB AAH22014 ABC74794 ABN46990 ACL68652 ACL98151
REF NP_001125521 NP_001274591 NP_004553 NP_054642 NP_054643
SP O60260
AlphaFold O60260

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks