BMRB Entry 5558
Click here to enlarge.
PDB ID: 1h5p
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5558
MolProbity Validation Chart
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry
Citation: Bottomley, Matthew; Collard, Michael; Huggenvik, Jodi; Liu, Zhihong; Gibson, Toby; Sattler, Michael. "The SAND domain structure defines a novel DNA-binding fold in transcriptional
regulation" Nat. Struct. Biol. 8, 626-633 (2001).
PubMed: 11427895
Assembly members:
SAND domain from human Sp100b protein, polymer, 104 residues, 12212 Da.
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET-9d
Entity Sequences (FASTA):
SAND domain from human Sp100b protein: MKHHHHHHPMDENINFKQSE
LPVTCGEVKGTLYKERFKQG
TSKKCIQSEDKKWFTPREFE
IEGDRGASKNWKLSIRCGGY
TLKVLMENKFLPEPPSTRKK
VTIK
- assigned_chemical_shifts
- coupling_constants
| Data type | Count |
| 1H chemical shifts | 485 |
| 13C chemical shifts | 296 |
| 15N chemical shifts | 97 |
| coupling constants | 30 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | Sp100b SAND domain | 1 |
Entities:
Entity 1, Sp100b SAND domain 104 residues - 12212 Da.
| 1 | MET | LYS | HIS | HIS | HIS | HIS | HIS | HIS | PRO | MET | ||||
| 2 | ASP | GLU | ASN | ILE | ASN | PHE | LYS | GLN | SER | GLU | ||||
| 3 | LEU | PRO | VAL | THR | CYS | GLY | GLU | VAL | LYS | GLY | ||||
| 4 | THR | LEU | TYR | LYS | GLU | ARG | PHE | LYS | GLN | GLY | ||||
| 5 | THR | SER | LYS | LYS | CYS | ILE | GLN | SER | GLU | ASP | ||||
| 6 | LYS | LYS | TRP | PHE | THR | PRO | ARG | GLU | PHE | GLU | ||||
| 7 | ILE | GLU | GLY | ASP | ARG | GLY | ALA | SER | LYS | ASN | ||||
| 8 | TRP | LYS | LEU | SER | ILE | ARG | CYS | GLY | GLY | TYR | ||||
| 9 | THR | LEU | LYS | VAL | LEU | MET | GLU | ASN | LYS | PHE | ||||
| 10 | LEU | PRO | GLU | PRO | PRO | SER | THR | ARG | LYS | LYS | ||||
| 11 | VAL | THR | ILE | LYS |
Related Database Links:
| PDB | 1H5P |
| EMBL | CAH18143 |
| GB | AAC50743 AAY14879 EAW70929 |
| REF | NP_001193630 XP_004033374 XP_009442793 XP_009442794 |
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated peaks
SPARKY: Backbone
or all simulated peaks