BMRB Entry 5596

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PDB ID: 1n91
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR5596
MolProbity Validation Chart

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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of the hypothetical protein yggU from E. coli. Northeast Structural Genomics Consortium Target ER14.

Deposition date:

2002-11-21

Original release date:

2003-09-05

Authors:

Aramini, James; Xiao, Rong; Huang, Y.; Acton, Thomas; Wu, Maggie; Mills, Jeffrey; Tejero, Roberto; Szyperski, Thomas; Montelione, Gaetano

Citation:

Citation: Aramini, James; Mills, Jeffrey; Xiao, Rong; Acton, Thomas; Wu, Maggie; Szyperski, Thomas; Montelione, Gaetano. "Letter to the Editor: Resonance assignments for the hypothetical protein yggU from Escherichia coli " J. Biomol. NMR 27, 285-286 (2003).

Assembly members:

Assembly members:
yggu_ecoli, polymer, 108 residues, 11883 Da.

Natural source:

Natural source: Common Name: E. Coli Taxonomy ID: 562 Superkingdom: Eubacteria Kingdom: not available Genus/species: Escherichia coli

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET21

Entity Sequences (FASTA):

Entity Sequences (FASTA):
yggu_ecoli: MDGVMSAVTVNDDGLVLRLY IQPKASRDSIVGLHGDEVKV AITAPPVDGQANSHLVKFLG KQFRVAKSQVVIEKGELGRH KQIKIINPQQIPPEVAALIN LEHHHHHH

Data sets:

assigned_chemical_shifts
- ER14_set_1
coupling_constants
- ER14_JNH_1

Data type	Count
1H chemical shifts	752
13C chemical shifts	454
15N chemical shifts	108
coupling constants	27

Time Domain Data

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	ER14	1

Entities:

Entity 1, ER14 108 residues - 11883 Da.

1

MET

ASP

GLY

VAL

MET

SER

ALA

VAL

THR

VAL

2

ASN

ASP

GLY

LEU

VAL

LEU

ARG

LEU

TYR

3

ILE

GLN

PRO

LYS

ALA

SER

ARG

ASP

SER

ILE

4

VAL

GLY

LEU

HIS

GLY

ASP

GLU

VAL

LYS

VAL

5

ALA

ILE

THR

ALA

PRO

VAL

ASP

GLY

GLN

6

ALA

ASN

SER

HIS

LEU

VAL

LYS

PHE

LEU

GLY

7

LYS

GLN

PHE

ARG

VAL

ALA

LYS

SER

GLN

VAL

8

VAL

ILE

GLU

LYS

GLY

GLU

LEU

GLY

ARG

HIS

9

LYS

GLN

ILE

LYS

ILE

ASN

PRO

GLN

10

ILE

PRO

GLU

VAL

ALA

LEU

ILE

ASN

11

LEU

GLU

HIS

Samples:

sample_1: yggu_ecoli, [U-100% 13C; U-100% 15N], 1.0 mM; MES 20 mM; NaCL 50 mM; DTT 5 mM; D2O 5%

sample_conditions_1: pH: 6.5; temperature: 293 K

Experiments:

Name	Sample	Sample state	Sample conditions
1H-15N-HSQC (regular)	sample_1	not available	sample_conditions_1
1H-13C-HSQC (aliphatic)	sample_1	not available	sample_conditions_1
3D 1H-15N NOESY	sample_1	not available	sample_conditions_1
3D 1H-13C NOESY (aliphatic)	sample_1	not available	sample_conditions_1
HNCO	sample_1	not available	sample_conditions_1
HNCA	sample_1	not available	sample_conditions_1
HN(CO)CA	sample_1	not available	sample_conditions_1
HN(CO)CACB	sample_1	not available	sample_conditions_1
HNCACB	sample_1	not available	sample_conditions_1
HA(CA)NH	sample_1	not available	sample_conditions_1
HA(CACO)NH	sample_1	not available	sample_conditions_1
(H)CC(CO)NH TOCSY	sample_1	not available	sample_conditions_1
H(CCCO)NH TOCSY	sample_1	not available	sample_conditions_1
HCCH COSY RD (sub1)	sample_1	not available	sample_conditions_1
HN RD	sample_1	not available	sample_conditions_1
HACA(CO)NH RD (sub1)	sample_1	not available	sample_conditions_1
HBCBHACA(CO)NH RD (sub1)	sample_1	not available	sample_conditions_1
HBCBHACACOHA RD (sub1)	sample_1	not available	sample_conditions_1
HBCBcgcdHD RD (sub1)	sample_1	not available	sample_conditions_1
H-TOCSY-CH-COSY RD	sample_1	not available	sample_conditions_1
1H-15N HSQC-J J=40ms	sample_1	not available	sample_conditions_1
1H-15N-HSQC (NH2 only)	sample_1	not available	sample_conditions_1
1H-15N-HSQC (full SW)	sample_1	not available	sample_conditions_1
1H-15N-HSQC (MEXICO)	sample_1	not available	sample_conditions_1
1H-13C-HSQC (aromatic)	sample_1	not available	sample_conditions_1
3D 1H-13C NOESY (aromatic)	sample_1	not available	sample_conditions_1
HCCH COSY RD (sub2)	sample_1	not available	sample_conditions_1
HACA(CO)NH RD (sub2)	sample_1	not available	sample_conditions_1
HBCBHACA(CO)NH RD (sub2)	sample_1	not available	sample_conditions_1
HCCH COSY (regular)	sample_1	not available	sample_conditions_1
HBCBcgcdHD RD (sub2)	sample_1	not available	sample_conditions_1
HBCBHACACOHA RD (sub2)	sample_1	not available	sample_conditions_1
1H-15N HSQC-J J=56ms	sample_1	not available	sample_conditions_1
1H-15N HSQC-J tauJ=33ms	sample_1	not available	sample_conditions_1
1H-15N HSQC-J tauJ=50ms	sample_1	not available	sample_conditions_1
1H-15N HSQC-J tauJ=70ms	sample_1	not available	sample_conditions_1
1H-15N HSQC-J tauJ=83ms	sample_1	not available	sample_conditions_1
1H-15N HSQC-J tauJ=100ms	sample_1	not available	sample_conditions_1
1H-15N HSQC-J tauJ=125ms	sample_1	not available	sample_conditions_1

PDB	1N91 1YH5
DBJ	BAB37252 BAE77016 BAG66691 BAG78745 BAI27237
EMBL	CAP77390 CAQ33263 CAQ90385 CAQ99901 CAR04470
GB	AAA69120 AAC75990 AAG58084 AAN44425 AAN81987
REF	NP_289525 NP_311856 NP_417428 NP_708718 NP_755414
SP	A1AFD9 B1IT54 B1LDG2 B1XFB3 B5YQF1
AlphaFold	A1AFD9 B1IT54 B1LDG2 B1XFB3 B5YQF1

BMRB Entry 5596

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

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