BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 10030

Title: Solution structure of the forth CH domain from human plastin 3 T-isoform

Deposition date: 2006-11-01 Original release date: 2008-08-12

Authors: Tomizawa, T.; Kigawa, T.; Koshiba, S.; Inoue, M.; Yokoyama, S.

Citation: Tomizawa, T.; Kigawa, T.; Koshiba, S.; Inoue, M.; Yokoyama, S.. "Solution structure of the forth CH domain from human plastin 3 T-isoform"  .

Assembly members:
CH domain, polymer, 124 residues, Formula weight is not available

Natural source:   Common Name: human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:   Production method: cell free synthesis   Vector: P040223-07

Entity Sequences (FASTA):
CH domain: GSSGSSGNDDIIVNWVNRTL SEAGKSTSIQSFKDKTISSS LAVVDLIDAIQPGCINYDLV KSGNLTEDDKHNNAKYAVSM ARRIGARVYALPEDLVEVKP KMVMTVFACLMGRGMKRVSG PSSG

Data sets:
Data typeCount
13C chemical shifts520
15N chemical shifts127
1H chemical shifts827

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1T-plastin1

Entities:

Entity 1, T-plastin 124 residues - Formula weight is not available

1   GLYSERSERGLYSERSERGLYASNASPASP
2   ILEILEVALASNTRPVALASNARGTHRLEU
3   SERGLUALAGLYLYSSERTHRSERILEGLN
4   SERPHELYSASPLYSTHRILESERSERSER
5   LEUALAVALVALASPLEUILEASPALAILE
6   GLNPROGLYCYSILEASNTYRASPLEUVAL
7   LYSSERGLYASNLEUTHRGLUASPASPLYS
8   HISASNASNALALYSTYRALAVALSERMET
9   ALAARGARGILEGLYALAARGVALTYRALA
10   LEUPROGLUASPLEUVALGLUVALLYSPRO
11   LYSMETVALMETTHRVALPHEALACYSLEU
12   METGLYARGGLYMETLYSARGVALSERGLY
13   PROSERSERGLY

Samples:

sample_1: CH domain, [U-13C; U-15N], 1.16 mM; d-Tris-HCl 20 mM; NaCl 100 mM; d-DTT 1 mM; NaN3 0.02%; H2O 90%; D2O 10%

condition_1: ionic strength: 120 mM; pH: 7.0; pressure: 1 atm; temperature: 296 K

Experiments:

NameSampleSample stateSample conditions
3D 13C-separated NOESYsample_1not availablecondition_1
3D 15N-separated NOESYsample_1not availablecondition_1

Software:

xwinnmr v2.6, Bruker - collection

NMRPipe v20030801, Delaglio, F. - processing

NMRView v5.0.4, Johnson, B. A. - data analysis

Kujira v0.901, Kobayashi, N. - data analysis

CYANA v2.0.17, Guntert, P. - refinement, structure solution

NMR spectrometers:

  • Bruker AVANCE 800 MHz

Related Database Links:

PDB
DBJ BAD96521 BAF83883 BAG35308 BAG57642 BAG57725
GB AAB02844 AAH08588 AAH39049 AAH56898 AAI50495
REF NP_001129497 NP_001165806 NP_001253150 NP_001269266 NP_001269267
SP P13797
AlphaFold P13797

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts