BMRB Entry 11608

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PDB ID: 2rvp
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR11608
MolProbity Validation Chart

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Title:
SOLUTION STRUCTURE OF DNA CONTAINING METALLO-BASE-PAIR
Deposition date:
2016-03-22
Original release date:
2016-08-22
Authors:
Dairaku, Takenori; Furuita, Kyoko; Sato, Hajime; Sebera, Jakub; Nakashima, Katsuyuki; Kondo, Jiro; Yamanaka, Daichi; Kondo, Yoshinori; Okamoto, Itaru; Ono, Akira; Sychrovsky, Vladimir; Kojima, Chojiro; Tanaka, Yoshiyuki
Citation:

Citation: Dairaku, Takenori; Furuita, Kyoko; Sato, Hajime; Sebera, Jakub; Nakashima, Katsuyuki; Kondo, Jiro; Yamanaka, Daichi; Kondo, Yoshinori; Okamoto, Itaru; Ono, Akira; Sychrovsky, Vladimir; Kojima, Chojiro; Tanaka, Yoshiyuki. "Structure Determination of an AgI-Mediated Cytosine-Cytosine Base Pair within DNA Duplex in Solution with 1H/15N/109Ag NMR Spectroscopy"  Chem. Eur. J. ., .-. (2016).
PubMed: 27505707

Assembly members:

Assembly members:
DNA_(5'-D(*TP*AP*AP*TP*AP*TP*AP*CP*TP*TP*AP*AP*TP*TP*A)-3'), polymer, 15 residues, 4566.059 Da.
DNA_(5'-D(*TP*AP*AP*TP*TP*AP*AP*CP*TP*AP*TP*AP*TP*TP*A)-3'), polymer, 15 residues, 4566.059 Da.
SILVER ION, non-polymer, 107.868 Da.

Natural source:

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
DNA_(5'-D(*TP*AP*AP*TP*AP*TP*AP*CP*TP*TP*AP*AP*TP*TP*A)-3'): TAATATACTTAATTA
DNA_(5'-D(*TP*AP*AP*TP*TP*AP*AP*CP*TP*AP*TP*AP*TP*TP*A)-3'): TAATTAACTATATTA

Data sets:
Data typeCount
1H chemical shifts244

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1DNA (5'-D(*TP*AP*AP*TP*AP*TP*AP*CP*TP*TP*AP*AP*TP*TP*A)-3')1
2DNA (5'-D(*TP*AP*AP*TP*TP*AP*AP*CP*TP*AP*TP*AP*TP*TP*A)-3')2
3SILVER ION3

Entities:

Entity 1, DNA (5'-D(*TP*AP*AP*TP*AP*TP*AP*CP*TP*TP*AP*AP*TP*TP*A)-3') 15 residues - 4566.059 Da.

1   DTDADADTDADTDADCDTDT
2   DADADTDTDA

Entity 2, DNA (5'-D(*TP*AP*AP*TP*TP*AP*AP*CP*TP*AP*TP*AP*TP*TP*A)-3') 15 residues - 4566.059 Da.

1   DTDADADTDTDADADCDTDA
2   DTDADTDTDA

Entity 3, SILVER ION - Ag - 107.868 Da.

1   AG