BMRB Entry 15154

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PDB ID: 2joa
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR15154
MolProbity Validation Chart

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Title:
HtrA1 bound to an optimized peptide: NMR assignment of PDZ domain and ligand resonances
Deposition date:
2007-03-01
Original release date:
2008-02-11
Authors:
Runyon, Steven; Zhang, Yingnan; Appleton, Brent; Sazinksy, Stephen; Wu, Ping; Pan, Borlan; Wiesmann, Christian; Skelton, Nicholas; Sidhu, Sachdev
Citation:

Citation: Runyon, Steven; Zhang, Yingnan; Appleton, Brent; Sazinksy, Stephen; Wu, Ping; Pan, Borlan; Wiesmann, Christian; Skelton, Nicholas; Sidhu, Sachdev. "Structural and functional analysis of the PDZ domains of human HtrA1 and HtrA3"  Protein Sci. 16, 2454-2471 (2007).
PubMed: 17962403

Assembly members:

Assembly members:
HtrA1-PDZ, polymer, 105 residues, 11587.366 Da.
synthetic_peptide_H1-C1, polymer, 7 residues, 962.093 Da.

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pET15b

Entity Sequences (FASTA):

Entity Sequences (FASTA):
HtrA1-PDZ: GSHMKKYIGIRMMSLTSSKA KELKDRHRDFPDVISGAYII EVIPDTPAEAGGLKENDVII SINGQSVVSANDVSDVIKRE STLNMVVRRGNEDIMITVIP EEIDP
synthetic_peptide_H1-C1: DSRIWWV

Data sets:
Data typeCount
1H chemical shifts782
13C chemical shifts432
15N chemical shifts105

Additional metadata:

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Assembly:

Entity Assembly IDEntity NameEntity ID
1HtrA1-PDZ1
2peptide2

Entities:

Entity 1, HtrA1-PDZ 105 residues - 11587.366 Da.

Residues 376-379 represent a non-native addition due to the construction

1   GLYSERHISMETLYSLYSTYRILEGLYILE
2   ARGMETMETSERLEUTHRSERSERLYSALA
3   LYSGLULEULYSASPARGHISARGASPPHE
4   PROASPVALILESERGLYALATYRILEILE
5   GLUVALILEPROASPTHRPROALAGLUALA
6   GLYGLYLEULYSGLUASNASPVALILEILE
7   SERILEASNGLYGLNSERVALVALSERALA
8   ASNASPVALSERASPVALILELYSARGGLU
9   SERTHRLEUASNMETVALVALARGARGGLY
10   ASNGLUASPILEMETILETHRVALILEPRO
11   GLUGLUILEASPPRO

Entity 2, peptide 7 residues - 962.093 Da.

synthetic, N-acylated peptide derived from phage-displayed peptide library

1   ASPSERARGILETRPTRPVAL

Related Database Links:

SWS Q92743
PDB 2JOA 2YTW 3NUM 3NZI
DBJ BAA13322 BAF82778 BAG52446 BAG52557 BAJ20722
EMBL CAA69226 CAI05909
GB AAC95151 AAC97211 AAD41525 AAH11352 AAI56553
REF NP_001245105 NP_001269011 NP_002766 XP_002807519 XP_002821267
SP F1N152 Q92743
TPG DAA14692
AlphaFold F1N152 Q92743

Download HSQC peak lists in one of the following formats:
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SPARKY: Backbone or all simulated peaks