BMRB Entry 15417

Name: Solution Structure of the Frameshift-Inducing RNA Stem-Loop in SIV
Published: 2007-09-18

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PDB ID: 2jtp
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR15417
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution Structure of the Frameshift-Inducing RNA Stem-Loop in SIV

Deposition date:

2007-08-04

Original release date:

2007-09-18

Authors:

Marcheschi, Ryan; Staple, David; Butcher, Samuel

Citation:

Citation: Marcheschi, Ryan; Staple, David; Butcher, Samuel. "Programmed Ribosomal Frameshifting in SIV is Induced by a Highly Structured RNA Stem-Loop" J. Mol. Biol. 373, 652-663 (2007).
PubMed: 17868691

Assembly members:

Assembly members:
SIV_RNA_(34-MER), polymer, 34 residues, Formula weight is not available

Natural source:

Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available

Experimental source:

Experimental source: Production method: enzymatic semisynthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
SIV_RNA_(34-MER): GGAUGGGGAAAGAAGCCCCG CAAUUUCCCCAUCC

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	137
15N chemical shifts	11
1H chemical shifts	249

Time Domain Data

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	RNA	1

Entities:

Entity 1, RNA 34 residues - Formula weight is not available

1

G

A

U

G

A

2

A

G

A

G

C

G

3

C

A

U

C

4

A

U

C

Name	Sample	Sample state	Sample conditions
2D 1H-1H TOCSY	sample_2	isotropic	sample_conditions_1
2D 1H-1H NOESY	sample_2	isotropic	sample_conditions_1
2D 1H-1H COSY	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_4	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_4	isotropic	sample_conditions_1
3D 1H-13C-1H HCCH-TOCSY	sample_4	isotropic	sample_conditions_1
3D NOESY-HMQC	sample_4	isotropic	sample_conditions_1
J-MODULATED 1H-13C CT-HSQC	sample_3	isotropic	sample_conditions_1
J-MODULATED 1H-13C CT-HSQC	sample_3	anisotropic	sample_conditions_1
2D 1H-1H NOESY	sample_1	isotropic	sample_conditions_1

BMRB Entry 15417

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers: