BMRB Entry 15635

Title:
Structure of SDF1 in complex with the CXCR4 N-terminus containing a sulfotyrosine at postition 21
Deposition date:
2008-01-24
Original release date:
2008-11-06
Authors:
Volkman, B.; Veldkamp, C.; Peterson, F.
Citation:

Citation: Veldkamp, Christopher; Seibert, Christoph; Peterson, Francis; De la Cruz, Noberto; Haugner, John; Basnet, Harihar; Sakmar, Thomas; Volkman, Brian. "Structural basis of CXCR4 sulfotyrosine recognition by the chemokine SDF-1/CXCL12"  Sci. Signal. 1, ra4-ra4 (2008).
PubMed: 18799424

Assembly members:

Assembly members:
CXCL12/SDF1-alpha, polymer, 70 residues, 8188.810 Da.
CXCR4, polymer, 40 residues, 4518.798 Da.

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo Sapiens

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pQE30-6HT

Entity Sequences (FASTA):

Data sets:
Data typeCount
13C chemical shifts850
15N chemical shifts212
1H chemical shifts1416

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1CXCL12/SDF1-alpha_11
2CXCR4_12
3CXCL12/SDF1-alpha_21
4CXCR4_22

Entities:

Entity 1, CXCL12/SDF1-alpha_1 70 residues - 8188.810 Da.

1   GLYMETLYSPROVALSERLEUSERTYRARG
2   CYSPROCYSARGPHEPHEGLUSERHISVAL
3   ALAARGALAASNVALLYSHISLEULYSILE
4   LEUASNTHRPROASNCYSALACYSGLNILE
5   VALALAARGLEULYSASNASNASNARGGLN
6   VALCYSILEASPPROLYSLEULYSTRPILE
7   GLNGLUTYRLEUGLULYSCYSLEUASNLYS

Entity 2, CXCR4_1 40 residues - 4518.798 Da.

1   GLYSERMETGLUGLYILESERILETYRTHR
2   SERASPASNTYRTHRGLUGLUMETGLYSER
3   GLYASPTYSASPSERMETLYSGLUPROALA
4   PHEARGGLUGLUASNALAASNPHEASNLYS

Related Database Links:

BMRB 15633 15636 15637 16142 16143 15636
PDB 1QG7 1SDF 2J7Z 2K01 2K03 2K04 2K05 2KEC 2KED 2SDF 3HP3 4UAI
DBJ BAA28601 BAA28602 BAF85317 BAG11056 BAG34757
EMBL CAG29279
GB AAA97434 AAB39332 AAB39333 AAB40516 AAH39893
REF NP_000600 NP_001009847 NP_001028106 NP_001029058 NP_001171605
SP O62657 P48061
AlphaFold O62657 P48061

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks