BMRB Entry 16225

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PDB ID: 2kh6
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR16225
MolProbity Validation Chart

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Title:
Solution Structure of cis-5R,6S-thymine glycol opposite complementary adenine in duplex DNA
Deposition date:
2009-03-24
Original release date:
2010-05-27
Authors:
Brown, Kyle
Citation:

Citation: Brown, Kyle; Roginskaya, Marina; Zou, Yue; Altamirano, Alvin; Basu, Ashis; Stone, Michael. "Binding of the human nucleotide excision repair proteins XPA and XPC/HR23B to the 5R-thymine glycol lesion and structure of the cis-(5R,6S) thymine glycol epimer in the 5'-GTgG-3' sequence: destabilization of two base pairs at the lesion site"  Nucleic Acids Res. 38, 428-440 (2010).
PubMed: 19892827

Assembly members:

Assembly members:
DNA_(5'-D(*DGP*DTP*DGP*DCP*DGP*(TG)P*DGP*DTP*DTP*DTP*DGP*DT)-3'), polymer, 12 residues, 3392.232 Da.
DNA_(5'-D(*DAP*DCP*DAP*DAP*DAP*DCP*DAP*DCP*DGP*DCP*DAP*DC)-3'), polymer, 12 residues, 3609.425 Da.

Natural source:

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
DNA_(5'-D(*DGP*DTP*DGP*DCP*DGP*(TG)P*DGP*DTP*DTP*DTP*DGP*DT)-3'): GTGCGXGTTTGT
DNA_(5'-D(*DAP*DCP*DAP*DAP*DAP*DCP*DAP*DCP*DGP*DCP*DAP*DC)-3'): ACAAACACGCAC

Data sets:
Data typeCount
1H chemical shifts231
31P chemical shifts20

Additional metadata:

  • Assembly
  • Samples and Experiments
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Assembly:

Entity Assembly IDEntity NameEntity ID
1DNA (5'-D(*DGP*DTP*DGP*DCP*DGP*(TG)P*DGP*DTP*DTP*DTP*DGP*DT)-3')1
2DNA (5'-D(*DAP*DCP*DAP*DAP*DAP*DCP*DAP*DCP*DGP*DCP*DAP*DC)-3')2

Entities:

Entity 1, DNA (5'-D(*DGP*DTP*DGP*DCP*DGP*(TG)P*DGP*DTP*DTP*DTP*DGP*DT)-3') 12 residues - 3392.232 Da.

1   DGDTDGDCDGCTGDGDTDTDT
2   DGDT

Entity 2, DNA (5'-D(*DAP*DCP*DAP*DAP*DAP*DCP*DAP*DCP*DGP*DCP*DAP*DC)-3') 12 residues - 3609.425 Da.

1   DADCDADADADCDADCDGDC
2   DADC