BMRB Entry 16606

Name: SOLUTION STRUCTURE OF THE KI O18/O8 Y87H IMMUNOGLOBULIN LIGHT CHAIN VARIABLE DOMAIN
Published: 2010-05-13

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PDB ID: 2kqm
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR16606
MolProbity Validation Chart

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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

SOLUTION STRUCTURE OF THE KI O18/O8 Y87H IMMUNOGLOBULIN LIGHT CHAIN VARIABLE DOMAIN

Deposition date:

2009-11-11

Original release date:

2010-05-13

Authors:

Volkman, B.; Peterson, F.; Ramirez-Alvarado, M.; Baden, E.

Citation:

Citation: Baden, E.; Peterson, F.; Owen, B.; Volkman, B.; Ramirez-Alvarado, M.. "TBD" To be published ., .-..

Assembly members:

Assembly members:
kI O18/O8 Y87H, polymer, 110 residues, 12103.389 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET-12a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
kI O18/O8 Y87H: STDIQMTQSPSSLSASVGDR VTITCQASQDISNYLNWYQQ KPGKAPKLLIYDASNLETGV PSRFSGSGSGTDFTFTISSL QPEDIATYHCQQYDNLPYTF GQGTKLEIKR

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	910
15N chemical shifts	256
1H chemical shifts	1548

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	kI O18/O8 Y87H_1	1
2	kI O18/O8 Y87H_2	1

Entities:

Entity 1, kI O18/O8 Y87H_1 110 residues - 12103.389 Da.

Numbering in the second monomer, chain B, is offset by 200. The ST dipeptide at the N-terminus is a cloning artifact.

1	SER	THR	ASP	ILE	GLN	MET	THR	GLN	SER	PRO
2	SER	SER	LEU	SER	ALA	SER	VAL	GLY	ASP	ARG
3	VAL	THR	ILE	THR	CYS	GLN	ALA	SER	GLN	ASP
4	ILE	SER	ASN	TYR	LEU	ASN	TRP	TYR	GLN	GLN
5	LYS	PRO	GLY	LYS	ALA	PRO	LYS	LEU	LEU	ILE
6	TYR	ASP	ALA	SER	ASN	LEU	GLU	THR	GLY	VAL
7	PRO	SER	ARG	PHE	SER	GLY	SER	GLY	SER	GLY
8	THR	ASP	PHE	THR	PHE	THR	ILE	SER	SER	LEU
9	GLN	PRO	GLU	ASP	ILE	ALA	THR	TYR	HIS	CYS
10	GLN	GLN	TYR	ASP	ASN	LEU	PRO	TYR	THR	PHE
11	GLY	GLN	GLY	THR	LYS	LEU	GLU	ILE	LYS	ARG

Name	Sample	Sample state	Sample conditions
3D_15N-separated_NOESY	sample_1	isotropic	sample_conditions_1
3D_13C-separated_NOESY	sample_1	isotropic	sample_conditions_1
3D_13C-separated_NOESY (AROMATIC)	sample_1	isotropic	sample_conditions_1

PDB	2KQM 2Q20 3CDC 3CDF
EMBL	CAC01163 CAC01176 CAC01184 CAC10844 CAC10892
GB	AAA58925 AAA58926 AAA58927 AAB30971 AAD16566
PIR	I52592 PH0862 S34088 S42263 S43528

BMRB Entry 16606

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	SER	THR	ASP	ILE	GLN	MET	THR	GLN	SER	PRO
2	SER	SER	LEU	SER	ALA	SER	VAL	GLY	ASP	ARG
3	VAL	THR	ILE	THR	CYS	GLN	ALA	SER	GLN	ASP
4	ILE	SER	ASN	TYR	LEU	ASN	TRP	TYR	GLN	GLN
5	LYS	PRO	GLY	LYS	ALA	PRO	LYS	LEU	LEU	ILE
6	TYR	ASP	ALA	SER	ASN	LEU	GLU	THR	GLY	VAL
7	PRO	SER	ARG	PHE	SER	GLY	SER	GLY	SER	GLY
8	THR	ASP	PHE	THR	PHE	THR	ILE	SER	SER	LEU
9	GLN	PRO	GLU	ASP	ILE	ALA	THR	TYR	HIS	CYS
10	GLN	GLN	TYR	ASP	ASN	LEU	PRO	TYR	THR	PHE
11	GLY	GLN	GLY	THR	LYS	LEU	GLU	ILE	LYS	ARG

1	SER	THR	ASP	ILE	GLN	MET	THR	GLN	SER	PRO
2	SER	SER	LEU	SER	ALA	SER	VAL	GLY	ASP	ARG
3	VAL	THR	ILE	THR	CYS	GLN	ALA	SER	GLN	ASP
4	ILE	SER	ASN	TYR	LEU	ASN	TRP	TYR	GLN	GLN
5	LYS	PRO	GLY	LYS	ALA	PRO	LYS	LEU	LEU	ILE
6	TYR	ASP	ALA	SER	ASN	LEU	GLU	THR	GLY	VAL
7	PRO	SER	ARG	PHE	SER	GLY	SER	GLY	SER	GLY
8	THR	ASP	PHE	THR	PHE	THR	ILE	SER	SER	LEU
9	GLN	PRO	GLU	ASP	ILE	ALA	THR	TYR	HIS	CYS
10	GLN	GLN	TYR	ASP	ASN	LEU	PRO	TYR	THR	PHE
11	GLY	GLN	GLY	THR	LYS	LEU	GLU	ILE	LYS	ARG

1	SER	THR	ASP	ILE	GLN	MET	THR	GLN	SER	PRO
2	SER	SER	LEU	SER	ALA	SER	VAL	GLY	ASP	ARG
3	VAL	THR	ILE	THR	CYS	GLN	ALA	SER	GLN	ASP
4	ILE	SER	ASN	TYR	LEU	ASN	TRP	TYR	GLN	GLN
5	LYS	PRO	GLY	LYS	ALA	PRO	LYS	LEU	LEU	ILE
6	TYR	ASP	ALA	SER	ASN	LEU	GLU	THR	GLY	VAL
7	PRO	SER	ARG	PHE	SER	GLY	SER	GLY	SER	GLY
8	THR	ASP	PHE	THR	PHE	THR	ILE	SER	SER	LEU
9	GLN	PRO	GLU	ASP	ILE	ALA	THR	TYR	HIS	CYS
10	GLN	GLN	TYR	ASP	ASN	LEU	PRO	TYR	THR	PHE
11	GLY	GLN	GLY	THR	LYS	LEU	GLU	ILE	LYS	ARG