BMRB Entry 16607

Name: SOLUTION STRUCTURE OF THE AL-09 H87Y IMMUNOGLOBULIN LIGHT CHAIN VARIABLE DOMAIN
Published: 2010-05-13

Click here to enlarge.

PDB ID: 2kqn
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR16607
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

SOLUTION STRUCTURE OF THE AL-09 H87Y IMMUNOGLOBULIN LIGHT CHAIN VARIABLE DOMAIN

Deposition date:

2009-11-11

Original release date:

2010-05-13

Authors:

Volkman, B.; Peterson, F.; Ramirez-Alvarado, M.; Baden, E.

Citation:

Citation: Baden, E.; Peterson, F.; Owen, B.; Volkman, B.; Ramirez-Alvarado, M.. "TBA" To be published ., .-..

Assembly members:

Assembly members:
AL-09_H87Y, polymer, 110 residues, 12154.475 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET-12a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
AL-09_H87Y: STDIQMTQSPSSLSASVGDR VTITCQASQDINNYLIWYQQ KPGQAPKLLIYDASTLETGV PSRFSGSGSGTEFTFTISSL QPEDLATYYCQQYDNLPYTF GQGTKLEIKR

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	906
15N chemical shifts	229
1H chemical shifts	1489

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	AL-09 H87Y_1	1
2	AL-09 H87Y_2	1

Entities:

Entity 1, AL-09 H87Y_1 110 residues - 12154.475 Da.

Numbering in the second monomer, chain B, is offset by 200. The ST dipeptide at the N-terminus is a cloning artifact.

1	SER	THR	ASP	ILE	GLN	MET	THR	GLN	SER	PRO
2	SER	SER	LEU	SER	ALA	SER	VAL	GLY	ASP	ARG
3	VAL	THR	ILE	THR	CYS	GLN	ALA	SER	GLN	ASP
4	ILE	ASN	ASN	TYR	LEU	ILE	TRP	TYR	GLN	GLN
5	LYS	PRO	GLY	GLN	ALA	PRO	LYS	LEU	LEU	ILE
6	TYR	ASP	ALA	SER	THR	LEU	GLU	THR	GLY	VAL
7	PRO	SER	ARG	PHE	SER	GLY	SER	GLY	SER	GLY
8	THR	GLU	PHE	THR	PHE	THR	ILE	SER	SER	LEU
9	GLN	PRO	GLU	ASP	LEU	ALA	THR	TYR	TYR	CYS
10	GLN	GLN	TYR	ASP	ASN	LEU	PRO	TYR	THR	PHE
11	GLY	GLN	GLY	THR	LYS	LEU	GLU	ILE	LYS	ARG

Name	Sample	Sample state	Sample conditions
3D_15N-separated_NOESY	sample_1	isotropic	sample_conditions_1
3D_13C-separated_NOESY	sample_1	isotropic	sample_conditions_1
3D_13C-separated_NOESY (AROMATIC)	sample_1	isotropic	sample_conditions_1

PDB	2KQN 2Q1E 3CDY 3U7A
GB	AAO11844

BMRB Entry 16607

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	SER	THR	ASP	ILE	GLN	MET	THR	GLN	SER	PRO
2	SER	SER	LEU	SER	ALA	SER	VAL	GLY	ASP	ARG
3	VAL	THR	ILE	THR	CYS	GLN	ALA	SER	GLN	ASP
4	ILE	ASN	ASN	TYR	LEU	ILE	TRP	TYR	GLN	GLN
5	LYS	PRO	GLY	GLN	ALA	PRO	LYS	LEU	LEU	ILE
6	TYR	ASP	ALA	SER	THR	LEU	GLU	THR	GLY	VAL
7	PRO	SER	ARG	PHE	SER	GLY	SER	GLY	SER	GLY
8	THR	GLU	PHE	THR	PHE	THR	ILE	SER	SER	LEU
9	GLN	PRO	GLU	ASP	LEU	ALA	THR	TYR	TYR	CYS
10	GLN	GLN	TYR	ASP	ASN	LEU	PRO	TYR	THR	PHE
11	GLY	GLN	GLY	THR	LYS	LEU	GLU	ILE	LYS	ARG

1	SER	THR	ASP	ILE	GLN	MET	THR	GLN	SER	PRO
2	SER	SER	LEU	SER	ALA	SER	VAL	GLY	ASP	ARG
3	VAL	THR	ILE	THR	CYS	GLN	ALA	SER	GLN	ASP
4	ILE	ASN	ASN	TYR	LEU	ILE	TRP	TYR	GLN	GLN
5	LYS	PRO	GLY	GLN	ALA	PRO	LYS	LEU	LEU	ILE
6	TYR	ASP	ALA	SER	THR	LEU	GLU	THR	GLY	VAL
7	PRO	SER	ARG	PHE	SER	GLY	SER	GLY	SER	GLY
8	THR	GLU	PHE	THR	PHE	THR	ILE	SER	SER	LEU
9	GLN	PRO	GLU	ASP	LEU	ALA	THR	TYR	TYR	CYS
10	GLN	GLN	TYR	ASP	ASN	LEU	PRO	TYR	THR	PHE
11	GLY	GLN	GLY	THR	LYS	LEU	GLU	ILE	LYS	ARG

1	SER	THR	ASP	ILE	GLN	MET	THR	GLN	SER	PRO
2	SER	SER	LEU	SER	ALA	SER	VAL	GLY	ASP	ARG
3	VAL	THR	ILE	THR	CYS	GLN	ALA	SER	GLN	ASP
4	ILE	ASN	ASN	TYR	LEU	ILE	TRP	TYR	GLN	GLN
5	LYS	PRO	GLY	GLN	ALA	PRO	LYS	LEU	LEU	ILE
6	TYR	ASP	ALA	SER	THR	LEU	GLU	THR	GLY	VAL
7	PRO	SER	ARG	PHE	SER	GLY	SER	GLY	SER	GLY
8	THR	GLU	PHE	THR	PHE	THR	ILE	SER	SER	LEU
9	GLN	PRO	GLU	ASP	LEU	ALA	THR	TYR	TYR	CYS
10	GLN	GLN	TYR	ASP	ASN	LEU	PRO	TYR	THR	PHE
11	GLY	GLN	GLY	THR	LYS	LEU	GLU	ILE	LYS	ARG