BMRB Entry 16813

Title:
Solution NMR structure of the parkin Ubl domain in complex with the endophilin-A1 SH3 domain
Deposition date:
2010-03-31
Original release date:
2010-05-19
Authors:
Trempe, Jean-Francois; Guennadi, Kozlov; Edna, Camacho; Kalle, Gehring
Citation:

Citation: Trempe, Jean-Francois; Chen, Carol X-Q; Grenier, Karl; Camacho, Edna Matta; Kozlov, Guennadi; McPherson, Peter; Gehring, Kalle; Fon, Edward. "SH3 domains from a subset of BAR proteins define a Ubl-binding domain and implicate parkin in synaptic ubiquitination."  Mol. Cell 36, 1034-1047 (2009).
PubMed: 20064468

Assembly members:

Assembly members:
Ubl, polymer, 81 residues, 8738.083 Da.
SH3, polymer, 71 residues, 7121.919 Da.

Natural source:

Natural source:   Common Name: Norway rat   Taxonomy ID: 10116   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Rattus norvegicus

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: pGEX-6p1

Data sets:
Data typeCount
13C chemical shifts406
15N chemical shifts150
1H chemical shifts833

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1Ubl1
2SH32

Entities:

Entity 1, Ubl 81 residues - 8738.083 Da.

Residues 1-5 represent a non-native tag generated after 3C protease cleavage of N-terminal GST

1   GLYPROLEUGLYSERMETILEVALPHEVAL
2   ARGPHEASNSERSERTYRGLYPHEPROVAL
3   GLUVALASPSERASPTHRSERILEPHEGLN
4   LEULYSGLUVALVALALALYSARGGLNGLY
5   VALPROALAASPGLNLEUARGVALILEPHE
6   ALAGLYLYSGLULEUGLNASNHISLEUTHR
7   VALGLNASNCYSASPLEUGLUGLNGLNSER
8   ILEVALHISILEVALGLNARGPROGLNARG
9   LYS

Entity 2, SH3 71 residues - 7121.919 Da.

Residues 1-9 represent a non-native tag generated after thrombin protease cleavage of N-terminal GST

1   GLYSERARGARGALASERVALGLYSERASP
2   GLNPROCYSCYSARGALALEUTYRASPPHE
3   GLUPROGLUASNGLUGLYGLULEUGLYPHE
4   LYSGLUGLYASPILEILETHRLEUTHRASN
5   GLNILEASPGLUASNTRPTYRGLUGLYMET
6   LEUHISGLYGLNSERGLYPHEPHEPROILE
7   ASNTYRVALGLUILELEUVALALALEUPRO
8   HIS

Related Database Links:

PDB 2KNB 4K95 4ZYN 3IQL
DBJ BAA92431 BAC31888 BAE22364 BAE23963
GB AAF34874 AAF68666 AAG37013 AAM21453 AAM21456 AAH18385 AAI23533 AAL37407 AAL37408 AIL95726
REF NP_064478 NP_001070308 NP_062408 XP_001925192 XP_002920770 XP_003783082
SP Q9JK66 Q62420
TPG DAA26952
AlphaFold Q9JK66 Q62420

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks