BMRB Entry 16922

Name: Backbone structure of the membrane domain of E. coli histidine kinase receptor KdpD
Published: 2010-06-15

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PDB ID: 2ksf
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR16922
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Backbone structure of the membrane domain of E. coli histidine kinase receptor KdpD

Deposition date:

2010-05-11

Original release date:

2010-06-15

Authors:

Maslennikov, Innokentiy; Klammt, Christian; Kefala, Georgia; Okamura, Mizuki; Esquivies, Luis; Kwiatkowski, Witek; Choe, Senyon

Citation:

Citation: Maslennikov, Innokentiy; Klammt, Christian; Hwang, Eunha; Kefala, Georgia; Okamura, Mizuki; Esquivies, Luis; Mors, Karsten; Glaubitz, Clemens; Kwiatkowski, Witek; Jeon, Young Ho; Choe, Senyon. "Membrane domain structures of three classes of histidine kinase receptors by cell-free expression and rapid NMR analysis." Proc. Natl. Acad. Sci. U.S.A. 107, 10902-10907 (2010).
PubMed: 20498088

Assembly members:

Assembly members:
histidine kinase receptor KdpD, polymer, 107 residues, 11442.749 Da.

Natural source:

Natural source: Common Name: E. coli Taxonomy ID: 562 Superkingdom: Eubacteria Kingdom: not available Genus/species: Escherichia coli

Experimental source:

Experimental source: Production method: cell free synthesis Host organism: E. coli - cell free Vector: pIVEX2.3

Entity Sequences (FASTA):

Entity Sequences (FASTA):
histidine kinase receptor KdpD: MVQIQGSVVAAALSAVITLI AMQWLMAFDAANLVMLYLLG VVVVALFYGRWPSVVATVIN VVSFDLFFIAPRGTLAVSDV QYLLTFAVMLTVGLVIGNLT AGVRYQA

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	257
15N chemical shifts	102
1H chemical shifts	102

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	histidine kinase receptor KdpD	1

Entities:

Entity 1, histidine kinase receptor KdpD 107 residues - 11442.749 Da.

1

MET

VAL

GLN

ILE

GLN

GLY

SER

VAL

ALA

2

ALA

LEU

SER

ALA

VAL

ILE

THR

LEU

ILE

3

ALA

MET

GLN

TRP

LEU

MET

ALA

PHE

ASP

ALA

4

ALA

ASN

LEU

VAL

MET

LEU

TYR

LEU

GLY

5

VAL

ALA

LEU

PHE

TYR

GLY

ARG

6

TRP

PRO

SER

VAL

ALA

THR

VAL

ILE

ASN

7

VAL

SER

PHE

ASP

LEU

PHE

ILE

ALA

8

PRO

ARG

GLY

THR

LEU

ALA

VAL

SER

ASP

VAL

9

GLN

TYR

LEU

THR

PHE

ALA

VAL

MET

LEU

10

THR

VAL

GLY

LEU

VAL

ILE

GLY

ASN

LEU

THR

11

ALA

GLY

VAL

ARG

TYR

GLN

ALA

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D HN(CO)CA	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1

PDB	2KSF
DBJ	BAA35352 BAB34146 BAG76279 BAI24084 BAI29552
EMBL	CAP75181 CAQ31160 CAQ97539 CAR06880 CAR11989
GB	AAA24041 AAC73789 AAG55016 AAN79253 AAZ87404
REF	NP_308750 NP_415223 WP_001295875 WP_001297245 WP_001298625
SP	P21865
AlphaFold	P21865

BMRB Entry 16922

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

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