BMRB Entry 17406
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PDB ID: 2l8f
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR17406
MolProbity Validation Chart
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NMR-STAR v3 text file.
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Citation: Lerman, Yelena; Kennedy, Scott; Shankar, Neelaabh; Parisien, Marc; Major, Francois; Turner, Douglas. "NMR structure of a 4 x 4 nucleotide RNA internal loop from an R2 retrotransposon: identification of a three purine-purine sheared pair motif and comparison to MC-SYM predictions." RNA 17, 1664-1677 (2011).
PubMed: 21778280
Assembly members:
RNA_(5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3'), polymer, 11 residues, 3522.178 Da.
RNA_(5'-R(*CP*GP*GP*AP*GP*GP*AP*CP*AP*CP*U)-3'), polymer, 11 residues, 3545.218 Da.
Natural source: Common Name: silkworm Taxonomy ID: 7091 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Bombyx mori
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
RNA_(5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3'): GUGAAGCCCGU
RNA_(5'-R(*CP*GP*GP*AP*GP*GP*AP*CP*AP*CP*U)-3'): CGGAGGACACU
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 24 |
| 15N chemical shifts | 8 |
| 1H chemical shifts | 156 |
| 31P chemical shifts | 20 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | RNA (5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3') | 1 |
| 2 | RNA (5'-R(*CP*GP*GP*AP*GP*GP*AP*CP*AP*CP*U)-3') | 2 |
Entities:
Entity 1, RNA (5'-R(*GP*UP*GP*AP*AP*GP*CP*CP*CP*GP*U)-3') 11 residues - 3522.178 Da.
| 1 | G | U | G | A | A | G | C | C | C | G | ||||
| 2 | U |
Entity 2, RNA (5'-R(*CP*GP*GP*AP*GP*GP*AP*CP*AP*CP*U)-3') 11 residues - 3545.218 Da.
| 1 | C | G | G | A | G | G | A | C | A | C | ||||
| 2 | U |