BMRB Entry 18415

Click here to enlarge.

PDB ID: 2ls8
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_anomalous, AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR18415
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Title:
Solution structure of human C-type lectin domain family 4 member D
Deposition date:
2012-04-23
Original release date:
2012-05-22
Authors:
Harris, R.; Gaudette, J.; Bandaranayake, A.; Banu, R.; Bonanno, J.; Calarese, D.; Celikgil, A.; Chamala, S.; Chan, M.; Chaparro, R.; Evans, B.; Garforth, S.; Gizzi, A.; Hillerich, B.; Kar, A.; Lafleur, J.; Lim, S.; Love, J.; Matikainen, B.; Patel, H.; Seidel, R.; Smith, B.; Stead, M.; Girvin, M.; Almo, S.
Citation:

Citation: Harris, R.; Gaudette, J.; Bandaranayake, A.; Banu, R.; Bonanno, J.; Calarese, D.; Celikgil, A.; Chamala, S.; Chan, M.; Chaparro, R.; Evans, B.; Garforth, S.; Gizzi, A.; Hillerich, B.; Kar, A.; Lafleur, J.; Lim, S.; Love, J.; Matikainen, B.; Patel, H.; Seidel, R.; Smith, B.; Stead, M.; Girvin, M.; Almo, S.. "Solution structure of human C-type lectin domain family 4 member D"  To be published ., .-..

Assembly members:

Assembly members:
C-type_lectin, polymer, 156 residues, 18610.879 Da.

Natural source:

Natural source:   Common Name: Human   Taxonomy ID: 9606   Superkingdom: Eukaryota   Kingdom: Metazoa   Genus/species: Homo sapiens

Experimental source:

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli   Vector: modified pET23a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
C-type_lectin: MVCPIDWRAFQSNCYFPLTD NKTWAESERNCSGMGAHLMT ISTEAEQNFIIQFLDRRLSY FLGLRDENAKGQWRWVDQTP FNPRRVFWHKNEPDNSQGEN CVVLVYNQDKWAWNDVPCNF EASRICKIPGTTLNAENLYF QSHHHHHHWSHPQFEK

Data sets:
Data typeCount
13C chemical shifts673
15N chemical shifts169
1H chemical shifts1047

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1human C-type lectin domain family 4 member D1

Entities:

Entity 1, human C-type lectin domain family 4 member D 156 residues - 18610.879 Da.

expressed sequence start-stop 84-215 (156 aa incl tag) N-term cloning artifact MV- C-term cloning artifact -AENLYFQSHHHHHHWSHPQFEK Only residues 1-142 included in structure calculations

1   METVALCYSPROILEASPTRPARGALAPHE
2   GLNSERASNCYSTYRPHEPROLEUTHRASP
3   ASNLYSTHRTRPALAGLUSERGLUARGASN
4   CYSSERGLYMETGLYALAHISLEUMETTHR
5   ILESERTHRGLUALAGLUGLNASNPHEILE
6   ILEGLNPHELEUASPARGARGLEUSERTYR
7   PHELEUGLYLEUARGASPGLUASNALALYS
8   GLYGLNTRPARGTRPVALASPGLNTHRPRO
9   PHEASNPROARGARGVALPHETRPHISLYS
10   ASNGLUPROASPASNSERGLNGLYGLUASN
11   CYSVALVALLEUVALTYRASNGLNASPLYS
12   TRPALATRPASNASPVALPROCYSASNPHE
13   GLUALASERARGILECYSLYSILEPROGLY
14   THRTHRLEUASNALAGLUASNLEUTYRPHE
15   GLNSERHISHISHISHISHISHISTRPSER
16   HISPROGLNPHEGLULYS

Related Database Links:

PDB 2LS8 3WHD
GB AAH32313 AAL37713 AAM75389 AAQ63173 AAS59161
REF NP_525126 XP_001134875 XP_003265492 XP_003808712 XP_004052704
SP Q8WXI8
AlphaFold Q8WXI8

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks