BMRB Entry 18469

Name: Solution NMR Structure of apo YdbC from Lactococcus lactis, Northeast Structural Genomics Consortium (NESG) Target KR150
Published: 2012-06-04

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PDB ID: 2ltd
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR18469
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Nicholas Rego and David Koes
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Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Solution NMR Structure of apo YdbC from Lactococcus lactis, Northeast Structural Genomics Consortium (NESG) Target KR150

Deposition date:

2012-05-16

Original release date:

2012-06-04

Authors:

Rossi, Paolo; Barbieri, Christopher; Aramini, James; Bini, Elisabetta; Lee, Hsiau-Wei; Janjua, Haleema; Ciccosanti, Colleen; Wang, Huang; Acton, Thomas; Xiao, Rong; Everett, John; Montelione, Gaetano

Citation:

Citation: Rossi, Paolo; Barbieri, Christopher; Aramini, James; Bini, Elisabetta; Acton, Thomas; Xiao, Rong; Montelione, Gaetano. "Solution NMR Structure of apo YdbC from Lactococcus lactis, Northeast Structural Genomics Consortium (NESG) Target KR150" To be published ., .-..

Assembly members:

Assembly members:
KR150, polymer, 80 residues, 9488.850 Da.

Natural source:

Natural source: Common Name: Lactococcus lactis Taxonomy ID: 1358 Superkingdom: Bacteria Kingdom: not available Genus/species: Lactococcus lactis

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET21_NESG

Entity Sequences (FASTA):

Entity Sequences (FASTA):
KR150: MADKLKFEIIEELIVLSENA KGWRKELNRVSWNDAEPKYD IRTWSPDHEKMGKGITLSEE EFGVLLKELGNKLEHHHHHH

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1
spectral_peak_list
- spectral_peak_list_1

Data type	Count
13C chemical shifts	338
15N chemical shifts	77
1H chemical shifts	538

Time Domain Data

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	KR150_1	1
2	KR150_2	1

Entities:

Entity 1, KR150_1 80 residues - 9488.850 Da.

1	MET	ALA	ASP	LYS	LEU	LYS	PHE	GLU	ILE	ILE
2	GLU	GLU	LEU	ILE	VAL	LEU	SER	GLU	ASN	ALA
3	LYS	GLY	TRP	ARG	LYS	GLU	LEU	ASN	ARG	VAL
4	SER	TRP	ASN	ASP	ALA	GLU	PRO	LYS	TYR	ASP
5	ILE	ARG	THR	TRP	SER	PRO	ASP	HIS	GLU	LYS
6	MET	GLY	LYS	GLY	ILE	THR	LEU	SER	GLU	GLU
7	GLU	PHE	GLY	VAL	LEU	LEU	LYS	GLU	LEU	GLY
8	ASN	LYS	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
3D HNCO	sample_1	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HNCACB	sample_1	isotropic	sample_conditions_1
3D 1H-13C arom NOESY	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aliphatic	sample_1	isotropic	sample_conditions_1
3D 1H-13C NOESY aromatic	sample_1	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_1	isotropic	sample_conditions_1
3D-X-filt-13C-editedNOESY	sample_2	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
3D HBHA(CO)NH	sample_1	isotropic	sample_conditions_1
3D HN(CA)CO	sample_1	isotropic	sample_conditions_1
3D HCCH-COSY	sample_1	isotropic	sample_conditions_1
3D CCH-TOCSY	sample_1	isotropic	sample_conditions_1
1H-15N Hetnoe	sample_3	isotropic	sample_conditions_1
1D T1	sample_1	isotropic	sample_conditions_1
1D T2(cpmg)	sample_1	isotropic	sample_conditions_1
j-mod HSQC (rdc)	sample_3	anisotropic	sample_conditions_1

BMRB	18496
PDB	2LTD 2LTT
DBJ	BAL50274 GAM81529
EMBL	CAL96933 CDG04366 CDI47747
GB	AAK04411 ABJ71956 ADA64134 ADJ59348 ADZ62963
REF	NP_266469 WP_003131683 WP_012897170 WP_015425778 WP_046124177

BMRB Entry 18469

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

Related Database Links:

1	MET	ALA	ASP	LYS	LEU	LYS	PHE	GLU	ILE	ILE
2	GLU	GLU	LEU	ILE	VAL	LEU	SER	GLU	ASN	ALA
3	LYS	GLY	TRP	ARG	LYS	GLU	LEU	ASN	ARG	VAL
4	SER	TRP	ASN	ASP	ALA	GLU	PRO	LYS	TYR	ASP
5	ILE	ARG	THR	TRP	SER	PRO	ASP	HIS	GLU	LYS
6	MET	GLY	LYS	GLY	ILE	THR	LEU	SER	GLU	GLU
7	GLU	PHE	GLY	VAL	LEU	LEU	LYS	GLU	LEU	GLY
8	ASN	LYS	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS

1	MET	ALA	ASP	LYS	LEU	LYS	PHE	GLU	ILE	ILE
2	GLU	GLU	LEU	ILE	VAL	LEU	SER	GLU	ASN	ALA
3	LYS	GLY	TRP	ARG	LYS	GLU	LEU	ASN	ARG	VAL
4	SER	TRP	ASN	ASP	ALA	GLU	PRO	LYS	TYR	ASP
5	ILE	ARG	THR	TRP	SER	PRO	ASP	HIS	GLU	LYS
6	MET	GLY	LYS	GLY	ILE	THR	LEU	SER	GLU	GLU
7	GLU	PHE	GLY	VAL	LEU	LEU	LYS	GLU	LEU	GLY
8	ASN	LYS	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS

1	MET	ALA	ASP	LYS	LEU	LYS	PHE	GLU	ILE	ILE
2	GLU	GLU	LEU	ILE	VAL	LEU	SER	GLU	ASN	ALA
3	LYS	GLY	TRP	ARG	LYS	GLU	LEU	ASN	ARG	VAL
4	SER	TRP	ASN	ASP	ALA	GLU	PRO	LYS	TYR	ASP
5	ILE	ARG	THR	TRP	SER	PRO	ASP	HIS	GLU	LYS
6	MET	GLY	LYS	GLY	ILE	THR	LEU	SER	GLU	GLU
7	GLU	PHE	GLY	VAL	LEU	LEU	LYS	GLU	LEU	GLY
8	ASN	LYS	LEU	GLU	HIS	HIS	HIS	HIS	HIS	HIS