BMRB Entry 18593

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PDB ID: 2lvy
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR18593
MolProbity Validation Chart

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Title:
Solution Structure of a RNA Duplex Containing a 2'-O-Pivaloyloxymethyl Modification
Deposition date:
2012-07-13
Original release date:
2015-07-24
Authors:
Baraguey, Carine
Citation:

Citation: Baraguey, Carine; Lescrinier, Eveline; Lavergne, Thomas; Debart, Francoise; Herdewijn, Piet; Vasseur, Jean-Jacques. "The biolabile 2'-O-pivaloyloxymethyl modification in an RNA helix: an NMR solution structure"  Org. Biomol. Chem. 11, 2638-2647 (2013).
PubMed: 23455628

Assembly members:

Assembly members:
modified_strand, polymer, 9 residues, 2499.596 Da.
non-modified_complementary_strand, polymer, 9 residues, 2885.813 Da.

Natural source:

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
modified_strand: CGCXACGCT
non-modified_complementary_strand: GCGUAGCGT

Data sets:
Data typeCount
1H chemical shifts178

Additional metadata:

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Assembly:

Entity Assembly IDEntity NameEntity ID
1DNA/RNA (5'-R(CP*GP*CP*(UPV)*AP*CP*GP*C)-D(P*T)-3')1
2DNA/RNA (5'-R(GP*CP*GP*UP*AP*CP*GP*C)-D(P*T)-3')2

Entities:

Entity 1, DNA/RNA (5'-R(CP*GP*CP*(UPV)*AP*CP*GP*C)-D(P*T)-3') 9 residues - 2499.596 Da.

Residues 1-8 are riboses. Residue 9 is an overhanging deoxythymidine.

1   CGCUPVACGCDT

Entity 2, DNA/RNA (5'-R(GP*CP*GP*UP*AP*CP*GP*C)-D(P*T)-3') 9 residues - 2885.813 Da.

Residues 10-17 are riboses. Residue 18 is an overhanging deoxythymidine.

1   GCGUAGCGDT