BMRB Entry 18715

Name: Structure of HIV-1 myr(-) matrix protein in complex with 1,2-dioctanoyl-sn-phosphatidylcholine
Published: 2013-02-11

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PDB ID: 2lya
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR18715
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Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

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Title:

Structure of HIV-1 myr(-) matrix protein in complex with 1,2-dioctanoyl-sn-phosphatidylcholine

Deposition date:

2012-09-14

Original release date:

2013-02-11

Authors:

Vlach, Jiri; Saad, Jamil

Citation:

Citation: Vlach, Jiri; Saad, Jamil. "Model for the interaction between HIV-1 Gag and plasma membrane" Proc. Natl. Acad. Sci. U.S.A. ., .-..

Assembly members:

Assembly members:
MA, polymer, 131 residues, 14734.753 Da.
1,2-DIOCTANOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, non-polymer, 510.622 Da.

Natural source:

Natural source: Common Name: HIV Taxonomy ID: 12721 Superkingdom: Viruses Kingdom: not available Genus/species: Lentivirus not available

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pET-11a

Entity Sequences (FASTA):

Entity Sequences (FASTA):
MA: GARASVLSGGELDKWEKIRL RPGGKKQYKLKHIVWASREL ERFAVNPGLLETSEGCRQIL GQLQPSLQTGSEELRSLYNT IAVLYCVHQRIDVKDTKEAL DKIEEEQNKSKKKAQQAAAD TGNNSQVSQNY

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	434
15N chemical shifts	131
1H chemical shifts	880

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
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Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	MA	1
2	entity_PC8	2

Entities:

Entity 1, MA 131 residues - 14734.753 Da.

1

GLY

ALA

ARG

ALA

SER

VAL

LEU

SER

GLY

2

GLU

LEU

ASP

LYS

TRP

GLU

LYS

ILE

ARG

LEU

3

ARG

PRO

GLY

LYS

GLN

TYR

LYS

LEU

4

LYS

HIS

ILE

VAL

TRP

ALA

SER

ARG

GLU

LEU

5

GLU

ARG

PHE

ALA

VAL

ASN

PRO

GLY

LEU

6

GLU

THR

SER

GLU

GLY

CYS

ARG

GLN

ILE

LEU

7

GLY

GLN

LEU

GLN

PRO

SER

LEU

GLN

THR

GLY

8

SER

GLU

LEU

ARG

SER

LEU

TYR

ASN

THR

9

ILE

ALA

VAL

LEU

TYR

CYS

VAL

HIS

GLN

ARG

10

ILE

ASP

VAL

LYS

ASP

THR

LYS

GLU

ALA

LEU

11

ASP

LYS

ILE

GLU

GLN

ASN

LYS

SER

12

LYS

ALA

GLN

ALA

ASP

13

THR

GLY

ASN

SER

GLN

VAL

SER

GLN

ASN

14

TYR

Entity 2, entity_PC8 - C24 H49 N O8 P - 510.622 Da.

1

PC8

Name	Sample	Sample state	Sample conditions
3D 13C-edited/13C-filtered NOESY	sample_1	isotropic	sample_conditions_1
3D HCCH-TOCSY	sample_1	isotropic	sample_conditions_1
2D 1H-13C HSQC	sample_1	isotropic	sample_conditions_1
3D HNCA	sample_2	isotropic	sample_conditions_1
3D HN(CO)CA	sample_2	isotropic	sample_conditions_1
3D HNCACB	sample_2	isotropic	sample_conditions_1
3D CBCA(CO)NH	sample_2	isotropic	sample_conditions_1
3D 1H-15N TOCSY	sample_2	isotropic	sample_conditions_1
3D 1H-15N NOESY	sample_2	isotropic	sample_conditions_1
3D 1H-13C NOESY	sample_1	isotropic	sample_conditions_1
2D 1H-15N HSQC	sample_2	isotropic	sample_conditions_1

EMBL	P12493 CBI61180 CBI61181 CBI61182 CBI61183 CBI61184
BMRB	15114 15116 18716
PDB	1HIW 1L6N 1UPH 2GOL 2H3F 2H3I 2H3Q 2H3V 2H3Z 2HMX 2JMG 2LYA 2LYB 2NV3 4JMU
DBJ	BAF34641 BAG48474
GB	AAA44987 AAB00898 AAB60571 AAC28445 AAC29216
SP	P12493 P12497
AlphaFold	P12493 P12497

BMRB Entry 18715

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

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