BMRB Entry 18835

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PDB ID: 2m11
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR18835
MolProbity Validation Chart

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Title:
Structure of perimidinone-derived synthetic nucleoside paired with guanine in DNA duplex
Deposition date:
2012-11-09
Original release date:
2013-06-10
Authors:
Kowal, Ewa; Lad, Rahul; Pallan, Pradeep; Muffly, Elizabeth; Wawrzak, Zdzislaw; Egli, Martin; Sturla, Shana; Stone, Michael
Citation:

Citation: Kowal, Ewa; Lad, Rahul; Pallan, Pradeep; Dhummakupt, Elizabeth; Wawrzak, Zdzislaw; Egli, Martin; Sturla, Shana; Stone, Michael. "Recognition of O6-benzyl-2'-deoxyguanosine by a perimidinone-derived synthetic nucleoside: a DNA interstrand stacking interaction."  Nucleic Acids Res. 41, 7566-7576 (2013).
PubMed: 23748954

Assembly members:

Assembly members:
5'-D(*CP*GP*CP*GP*AP*AP*TP*TP)[D3N]P-D(*GP*CP*GP)-3', polymer, 12 residues, 2755.845 Da.

Natural source:

Natural source:   Common Name: not available   Taxonomy ID: not available   Superkingdom: not available   Kingdom: not available   Genus/species: not available not available

Experimental source:

Experimental source:   Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
5'-D(*CP*GP*CP*GP*AP*AP*TP*TP)[D3N]P-D(*GP*CP*GP)-3': CGCGAATTXGCG

Data sets:
Data typeCount
1H chemical shifts107
homonuclear NOE values153

Additional metadata:

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Assembly:

Entity Assembly IDEntity NameEntity ID
1strand 11
2strand 21

Entities:

Entity 1, strand 1 12 residues - 2755.845 Da.

1   DCDGDCDGDADADTDTD3NDG
2   DCDG