BMRB Entry 19279

Name: Structure of d[GGGAAGGGCGCGAAGCATTCGCGAGGTAGG] duplex-quadruplex hybrid
Published: 2013-07-08

Click here to enlarge.

PDB ID: 2m91
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR19279
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

Structure of d[GGGAAGGGCGCGAAGCATTCGCGAGGTAGG] duplex-quadruplex hybrid

Deposition date:

2013-05-30

Original release date:

2013-07-08

Authors:

Lim, Kah Wai; Phan, Anh Tuan

Citation:

Citation: Lim, Kah Wai; Phan, Anh Tuan. "Structural basis of DNA quadruplex-duplex junction formation." Angew. Chem. Int. Ed. Engl. 52, 8566-8569 (2013).
PubMed: 23794476

Assembly members:

Assembly members:
DNA_(30-MER), polymer, 30 residues, 9444.141 Da.

Natural source:

Natural source: Common Name: not available Taxonomy ID: not available Superkingdom: not available Kingdom: not available Genus/species: not available not available

Experimental source:

Experimental source: Production method: chemical synthesis

Entity Sequences (FASTA):

Entity Sequences (FASTA):
DNA_(30-MER): GGGAAGGGCGCGAAGCATTC GCGAGGTAGG

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
1H chemical shifts	245

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	DNA (30-MER)	1

Entities:

Entity 1, DNA (30-MER) 30 residues - 9444.141 Da.

1	DG	DG	DG	DA	DA	DG	DG	DG	DC	DG
2	DC	DG	DA	DA	DG	DC	DA	DT	DT	DC
3	DG	DC	DG	DA	DG	DG	DT	DA	DG	DG

Name	Sample	Sample state	Sample conditions
2D 1H-1H NOESY	DNA-2	isotropic	sample_conditions_1
2D 1H-1H JR NOESY	DNA-1	isotropic	sample_conditions_1
2D 1H-1H JR NOESY	DNA-1	isotropic	sample_conditions_2
2D 1H-1H COSY	DNA-2	isotropic	sample_conditions_1
2D 1H-1H TOCSY	DNA-2	isotropic	sample_conditions_1
2D 1H-13C HSQC	DNA-2	isotropic	sample_conditions_1
2D 1H-13C JR HMBC	DNA-1	isotropic	sample_conditions_1
2D 1H-31P HSQC	DNA-2	isotropic	sample_conditions_1
H-D EXCHANGE	DNA-2	isotropic	sample_conditions_1
15N-FILTERED	DNA-3	isotropic	sample_conditions_1
15N-FILTERED	DNA-3	isotropic	sample_conditions_2
D-LABELED	DNA-4	isotropic	sample_conditions_1

BMRB Entry 19279

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers:

1	DG	DG	DG	DA	DA	DG	DG	DG	DC	DG
2	DC	DG	DA	DA	DG	DC	DA	DT	DT	DC
3	DG	DC	DG	DA	DG	DG	DT	DA	DG	DG

1	DG	DG	DG	DA	DA	DG	DG	DG	DC	DG
2	DC	DG	DA	DA	DG	DC	DA	DT	DT	DC
3	DG	DC	DG	DA	DG	DG	DT	DA	DG	DG

1	DG	DG	DG	DA	DA	DG	DG	DG	DC	DG
2	DC	DG	DA	DA	DG	DC	DA	DT	DT	DC
3	DG	DC	DG	DA	DG	DG	DT	DA	DG	DG