BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules
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BMRB Entry 25537

Title: Backbone 1H, Chemical Shift Assignments for Cn-APM1   PubMed: 25639464

Deposition date: 2015-06-15 Original release date: 2015-06-15

Authors: Santana, Mabio; Oliveira, Aline; Queiroz, Luiz; Mandal, Santi; Matos, Carolina; Dias, Renata; Franco, Octavio; Liao, Luciano

Citation: Santana, Mabio; Oliveira, Aline; Queiroz, Luiz; Mandal, Santi; Matos, Carolina; Dias, Renata; Franco, Octavio; Liao, Luciano. "Structural insights into Cn-AMP1, a short disulfide-free multifunctional peptide from green coconut water"  FEBS Lett. 589, 639-644 (2015).

Assembly members:
Peptide, polymer, 10 residues, 877.004 Da.

Natural source:   Common Name: coconut palm   Taxonomy ID: 13894   Superkingdom: Eukaryota   Kingdom: Viridiplantae   Genus/species: Cocos Nucifera

Experimental source:   Production method: obtained from a vendor   Host organism: Cocos Nucifera Water

Entity Sequences (FASTA):
Peptide: SVAGRAQGMX

Data sets:
Data typeCount
1H chemical shifts39

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
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Assembly:

Entity Assembly IDEntity NameEntity ID
1Cn-AMP11

Entities:

Entity 1, Cn-AMP1 10 residues - 877.004 Da.

1   SERVALALAGLYARGALAGLNGLYMETNH2

Samples:

sample-Cn-AMP1: Peptide 1.0 ± 0.05 mM

sample_condition-Cn-AMP1: pH: 3.97; pressure: 1 atm; temperature: 298.15 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-1H NOESYsample-Cn-AMP1isotropicsample_condition-Cn-AMP1
2D 1H-1H TOCSYsample-Cn-AMP1isotropicsample_condition-Cn-AMP1

Software:

X-PLOR_NIH v2.38, Schwieters, Kuszewski, Tjandra and Clore - chemical shift assignment, data analysis

NMR spectrometers:

  • Bruker Avance III 500 MHz