BMRB Entry 25663

Name: SOLUTION STRUCTURE OF THE LINK MODULE OF HUMAN TSG-6 IN PRESENCE OF A CHONDROITIN 4-SULFATE HEXASACCHARIDE
Published: 2016-01-11

Click here to enlarge.

PDB ID: 2n40
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full, LACS, SPARTA
BMRB Entry DOI: doi:10.13018/BMR25663
MolProbity Validation Chart

NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
XML gzip file.
RDF gzip file.
All files associated with the entry

Nicholas Rego and David Koes
3Dmol.js: molecular visualization with WebGL
Bioinformatics (2015) 31 (8): 1322-1324 doi:10.1093/bioinformatics/btu829

Select model:

I am color blind

Download raw data. Direct link to this display. Help

Title:

SOLUTION STRUCTURE OF THE LINK MODULE OF HUMAN TSG-6 IN PRESENCE OF A CHONDROITIN 4-SULFATE HEXASACCHARIDE

Deposition date:

2015-06-23

Original release date:

2016-01-11

Authors:

Park, Younghee; Prestegard, James

Citation:

Citation: Park, Younghee; Jowitt, Thomas; Day, Anthony; Prestegard, James. "NMR insight into the multiple glycosaminoglycan binding modes of the Link module from human TSG-6" Biochemistry 55, 262-276 (2016).
PubMed: 26685054

Assembly members:

Assembly members:
Link-TSG-6, polymer, 98 residues, 10946.665 Da.

Natural source:

Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens

Experimental source:

Experimental source: Production method: recombinant technology Host organism: Escherichia coli Vector: pRK172

Entity Sequences (FASTA):

Entity Sequences (FASTA):
Link-TSG-6: GVYHREARSGKYKLTYAEAK AVCEFEGGHLATYKQLEAAR KIGFHVCAAGWMAKGRVGYP IVKPGPNCGFGKTGIIDYGI RLNRSERWDAYCYNPHAK

Data sets:

assigned_chemical_shifts
- assigned_chem_shift_list_1

Data type	Count
13C chemical shifts	358
15N chemical shifts	93
1H chemical shifts	663

Additional metadata:

Assembly
Samples and Experiments
Software
Spectrometers
Hide all

Assembly:

Entity Assembly ID	Entity Name	Entity ID
1	Link-TSG-6	1

Entities:

Entity 1, Link-TSG-6 98 residues - 10946.665 Da.

number begins from 1 (36-133 in whole sequence of TSG-6)

1

GLY

VAL

TYR

HIS

ARG

GLU

ALA

ARG

SER

GLY

2

LYS

TYR

LYS

LEU

THR

TYR

ALA

GLU

ALA

LYS

3

ALA

VAL

CYS

GLU

PHE

GLU

GLY

HIS

LEU

4

ALA

THR

TYR

LYS

GLN

LEU

GLU

ALA

ARG

5

LYS

ILE

GLY

PHE

HIS

VAL

CYS

ALA

GLY

6

TRP

MET

ALA

LYS

GLY

ARG

VAL

GLY

TYR

PRO

7

ILE

VAL

LYS

PRO

GLY

PRO

ASN

CYS

GLY

PHE

8

GLY

LYS

THR

GLY

ILE

ASP

TYR

GLY

ILE

9

ARG

LEU

ASN

ARG

SER

GLU

ARG

TRP

ASP

ALA

10

TYR

CYS

TYR

ASN

PRO

HIS

ALA

LYS

Name	Sample	Sample state	Sample conditions
2D 1H-15N HSQC	13C-15N_Link-TSG-6	isotropic	sample_conditions_1
3D CBCA(CO)NH	13C-15N_Link-TSG-6	isotropic	sample_conditions_1
3D HNCO	13C-15N_Link-TSG-6	isotropic	sample_conditions_1
3D HNCACB	13C-15N_Link-TSG-6	isotropic	sample_conditions_1
3D HCCH-TOCSY	13C-15N_Link-TSG-6	isotropic	sample_conditions_1
3D 1H-15N NOESY	13C-15N_Link-TSG-6	isotropic	sample_conditions_1
3D 1H-13C NOESY	13C-15N_Link-TSG-6	isotropic	sample_conditions_1
2D IPAP HSQC	13C-15N_LinkTSG-6_RDC	isotropic	sample_conditions_1
2D IPAP HSQC	13C-15N_LinkTSG-6_RDC	anisotropic	sample_conditions_1

Download HSQC peak lists in one of the following formats:
CSV: Backbone or all simulated peaks
SPARKY: Backbone or all simulated peaks

BMRB Entry 25663

Additional metadata:

Assembly:

Entities:

Samples:

Experiments:

Software:

NMR spectrometers: