BMRB Entry 27208
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR27208
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Title: Fc fragment of mouse immunoglobulin G PubMed: 28953258
Deposition date: 2017-08-07 Original release date: 2017-10-18
Authors: Yanaka, Saeko; Yamazaki, Toshio; Yogo, Rina; Yagi, Hirokazu; Kato, Koichi
Citation: Yanaka, Saeko; Yamazaki, Toshio; Yogo, Rina; Noda, Masanori; Uchiyama, Susumu; Yagi, Hirokazu; Kato, Koichi. "NMR Detection of Semi-Specific Antibody Interactions in Serum Environments." Molecules 22, E1619-E1619 (2017).
Assembly members:
Fc_fragment_of_mouse_immunoglobulin_G, polymer, 219 residues, Formula weight is not available
Natural source: Common Name: Mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus
Experimental source: Production method: recombinant technology Host organism: mouse cell line Vector: not applicable
Entity Sequences (FASTA):
Fc_fragment_of_mouse_immunoglobulin_G: CPAPNLEGGPSVFIFPPNIK
DVLMISLTPKVTCVVVDVSE
DDPDVQISWFVNNVEVHTAQ
TQTHREDYNSTIRVVSTLPI
QHQDWMSGKEFKCKVNNKDL
PSPIERTISKIKGLVRAPQV
YILPPPAEQLSRKDVSLTCL
VVGFNPGDISVEWTSNGHTE
ENYKDTAPVLDSDGSYFIYS
KLNMKTSKWEKTDSFSCNVR
HEGLKNYYLKKTISRSPGK
- assigned_chemical_shifts
Data type | Count |
13C chemical shifts | 425 |
15N chemical shifts | 197 |
1H chemical shifts | 197 |
Additional metadata:
Assembly:
Entity Assembly ID | Entity Name | Entity ID |
---|---|---|
1 | Fc fragment of mouse immunoglobulin G | 1 |
Entities:
Entity 1, Fc fragment of mouse immunoglobulin G 219 residues - Formula weight is not available
1 | CYS | PRO | ALA | PRO | ASN | LEU | GLU | GLY | GLY | PRO | ||||
2 | SER | VAL | PHE | ILE | PHE | PRO | PRO | ASN | ILE | LYS | ||||
3 | ASP | VAL | LEU | MET | ILE | SER | LEU | THR | PRO | LYS | ||||
4 | VAL | THR | CYS | VAL | VAL | VAL | ASP | VAL | SER | GLU | ||||
5 | ASP | ASP | PRO | ASP | VAL | GLN | ILE | SER | TRP | PHE | ||||
6 | VAL | ASN | ASN | VAL | GLU | VAL | HIS | THR | ALA | GLN | ||||
7 | THR | GLN | THR | HIS | ARG | GLU | ASP | TYR | ASN | SER | ||||
8 | THR | ILE | ARG | VAL | VAL | SER | THR | LEU | PRO | ILE | ||||
9 | GLN | HIS | GLN | ASP | TRP | MET | SER | GLY | LYS | GLU | ||||
10 | PHE | LYS | CYS | LYS | VAL | ASN | ASN | LYS | ASP | LEU | ||||
11 | PRO | SER | PRO | ILE | GLU | ARG | THR | ILE | SER | LYS | ||||
12 | ILE | LYS | GLY | LEU | VAL | ARG | ALA | PRO | GLN | VAL | ||||
13 | TYR | ILE | LEU | PRO | PRO | PRO | ALA | GLU | GLN | LEU | ||||
14 | SER | ARG | LYS | ASP | VAL | SER | LEU | THR | CYS | LEU | ||||
15 | VAL | VAL | GLY | PHE | ASN | PRO | GLY | ASP | ILE | SER | ||||
16 | VAL | GLU | TRP | THR | SER | ASN | GLY | HIS | THR | GLU | ||||
17 | GLU | ASN | TYR | LYS | ASP | THR | ALA | PRO | VAL | LEU | ||||
18 | ASP | SER | ASP | GLY | SER | TYR | PHE | ILE | TYR | SER | ||||
19 | LYS | LEU | ASN | MET | LYS | THR | SER | LYS | TRP | GLU | ||||
20 | LYS | THR | ASP | SER | PHE | SER | CYS | ASN | VAL | ARG | ||||
21 | HIS | GLU | GLY | LEU | LYS | ASN | TYR | TYR | LEU | LYS | ||||
22 | LYS | THR | ILE | SER | ARG | SER | PRO | GLY | LYS |
Samples:
sample_1: Fc fragment of mouse immunoglobulin G, [U-13C; U-15N], 10.4 mg/mL
sample_conditions_1: ionic strength: 50 mM; pH: 6.0; pressure: 1 atm; temperature: 325 K
Experiments:
Name | Sample | Sample state | Sample conditions |
---|---|---|---|
2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
3D HNCO | sample_1 | isotropic | sample_conditions_1 |
3D HCACO | sample_1 | isotropic | sample_conditions_1 |
3D HNCA | sample_1 | isotropic | sample_conditions_1 |
3D HN(CO)CA | sample_1 | isotropic | sample_conditions_1 |
Software:
NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - chemical shift assignment
NMR spectrometers:
- Bruker Avance 800 MHz
- Bruker Avance 900 MHz
- Bruker DRX 400 MHz
- Bruker DMX 500 MHz
Download HSQC peak lists in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts